PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022164.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TALE

Protein Properties

Length: 832aa MW: 90009.8 Da PI: 7.3906

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022164.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	3e-09	595	632	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + CCG022164.2 595 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 632 664459******************************88 PP
2	BELL	94	1.3e-30	472	526	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdaia q+ CCG022164.2 472 KVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIAAQL 526 7***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.4E-69	396	524	IPR006563	POX domain
Pfam	PF07526	2.2E-41	401	523	IPR006563	POX domain
PROSITE profile	PS50071	12.568	573	636	IPR001356	Homeobox domain
SMART	SM00389	2.0E-9	576	640	IPR001356	Homeobox domain
CDD	cd00086	5.15E-13	576	637	No hit	No description
SuperFamily	SSF46689	5.99E-17	578	643	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-28	579	642	IPR009057	Homeodomain-like
Pfam	PF05920	4.3E-18	593	632	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 832 aa Download sequence Send to blast
MSESFLSLHT LKLQEKKGNN KVVTCEGATK KIIERDDDDD HLQDIDMGIA TTPPFPPILP 60 HSKTHQLSSP ILQNTKSNPS NHNSMSQDYH QAQQIRRDKL RVQSGYEQPP PALLGIGEEE 120 SSGLPVYETA GMLSEMFNFP PAGGPAAAVD LLDQPLRSNY RTQPRQQQQP VTTNDWYNSN 180 NTQGMAVGGL GIGNSKNHNN NDSRESLAQH QHQISGINAD SATAMQLFLM NPSQPRSPQS 240 PSLSHHQPPP STSSTLHMLL PNPSSSLQGF STVSGGGFGA TSVISPPQFT WVPDSSHVGG 300 NTGAPLSNQT EISGVVEGQG LSLSLSSSLQ HLEAAKAEEL RMGDGGLLYY NQGAGGSSSS 360 QYYKNLGGHQ PHQALHFQGG AGQNHHQVHV GFGSSLGVVN VLRNSKYVKA AQELLEEFCS 420 VGRGQFKKSK FGRQNTNPSS NNNPGGGGGS SSSTKDLPPL SAADRIEHQR RKVDRRYNHY 480 CEQMQMVVNS FDLVMGFGAA VPYTALAQKA MSRHFRCLKD AIAAQLKLSC ELLGEKDGAG 540 TSGITKGETP RLKLLEQSLR QQRAFHQMGM MEQEAWRPQR GLPERSVNIL RAWLFEHFLH 600 PYPSDADKHL LARQTGLSRN QVSNWFINAR VRLWKPMVED MYQQESKEEE PGAEDRERKQ 660 ANNNSNNSGL AQTPTPTTTT TGSSAPAATT TTIPSGKRSE INANENDPSL LAINRQCFSE 720 NQTKLSTSSS TTTTTIITPI NITSATEAAP PPHAGQPFHD FADDTCRHGS IVTADYGTTS 780 SNANAGAGHI GSTLIRFGTT TAGDVSLTLG LRHAGNMPEK SPTFSVRDFG GC

Sequence ? help Back to Top

Protein Sequence Length: 832 aa Download sequence Send to blast

MSESFLSLHT LKLQEKKGNN KVVTCEGATK KIIERDDDDD HLQDIDMGIA TTPPFPPILP  60
HSKTHQLSSP ILQNTKSNPS NHNSMSQDYH QAQQIRRDKL RVQSGYEQPP PALLGIGEEE  120
SSGLPVYETA GMLSEMFNFP PAGGPAAAVD LLDQPLRSNY RTQPRQQQQP VTTNDWYNSN  180
NTQGMAVGGL GIGNSKNHNN NDSRESLAQH QHQISGINAD SATAMQLFLM NPSQPRSPQS  240
PSLSHHQPPP STSSTLHMLL PNPSSSLQGF STVSGGGFGA TSVISPPQFT WVPDSSHVGG  300
NTGAPLSNQT EISGVVEGQG LSLSLSSSLQ HLEAAKAEEL RMGDGGLLYY NQGAGGSSSS  360
QYYKNLGGHQ PHQALHFQGG AGQNHHQVHV GFGSSLGVVN VLRNSKYVKA AQELLEEFCS  420
VGRGQFKKSK FGRQNTNPSS NNNPGGGGGS SSSTKDLPPL SAADRIEHQR RKVDRRYNHY  480
CEQMQMVVNS FDLVMGFGAA VPYTALAQKA MSRHFRCLKD AIAAQLKLSC ELLGEKDGAG  540
TSGITKGETP RLKLLEQSLR QQRAFHQMGM MEQEAWRPQR GLPERSVNIL RAWLFEHFLH  600
PYPSDADKHL LARQTGLSRN QVSNWFINAR VRLWKPMVED MYQQESKEEE PGAEDRERKQ  660
ANNNSNNSGL AQTPTPTTTT TGSSAPAATT TTIPSGKRSE INANENDPSL LAINRQCFSE  720
NQTKLSTSSS TTTTTIITPI NITSATEAAP PPHAGQPFHD FADDTCRHGS IVTADYGTTS  780
SNANAGAGHI GSTLIRFGTT TAGDVSLTLG LRHAGNMPEK SPTFSVRDFG GC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	2e-16	582	639	1	58	Homeobox protein Meis1
4xrs_B	2e-16	582	639	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU227798	0.0	CU227798.1 Populus EST from severe drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011025689.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-171	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A2K1ZNK1	0.0	A0A2K1ZNK1_POPTR; Uncharacterized protein
STRING	POPTR_0007s12170.2	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3524	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-158	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]