PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022113.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 669aa    MW: 77498.4 Da    PI: 6.0606
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022113.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.83.3e-2259141290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  fYn YAk+ GF +r+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w+++++eleHnH ++
  CCG022113.1  59 FYNCYAKQQGFGIRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMVKFRLMENKRWKIIEVELEHNHLIT 141
                  9***************99997.66779**************99888.....***********************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1959141IPR004330FAR1 DNA binding domain
PfamPF105512.2E-23262348IPR018289MULE transposase domain
PROSITE profilePS509669.248549585IPR007527Zinc finger, SWIM-type
PfamPF044349.4E-5556582IPR007527Zinc finger, SWIM-type
SMARTSM005756.1E-6560587IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MEEECLNTES VGNDDDADEC GIEGDCAMTE YVNQTGVIEN PLPPSVGMEF ESYEDVYYFY  60
NCYAKQQGFG IRVSNTWYRK SKERYRGKLS CSSAGFKKKS EANRPRPETR TGCPAMVKFR  120
LMENKRWKII EVELEHNHLI TPGSGKFYKS HKIIGPGTKR TLQLDGPEEV QKIKLFRTVI  180
VDAEGNGGVD TDGGQFGNDV LLPSQLKLKE GDAQAVQSFF FRLQLMDPNF FYVVELNEKG  240
YMRNLFWTDA RSRAAYGYFC DVIAIDTMCL TYKFEVPLVA FIGVNHHGQP ILLGCGMLAD  300
ETTESYMWLL RAWLTCMLGR PPQAIISDHH KTLQTAIADV FPRASHCFYL SRILQRIPEA  360
LGELFDFEAI KVSLSKVVYC FLRPEEFEAA WEEMTQHHGI RDHKWIQTLY EDRKRWVPAY  420
LKETFLPGML PLQQNETAFS FFEGYLDRHT SLKEFMDNYD QALQANRQLE SLADMDSRNS  480
SFMLKSRCFF ELQLSKLYTN EILRRFEREV EGMYSCFSTR QAYVDGQVMT YLVKEEVEVE  540
GSKRETRDFE VMYNASEMDV LCVCGLFNIS GYLCRHALSV LNQNGLKEMP PQYILTRWRK  600
DMKRSYVLDH SCRGIDINNP IHRYDHLYKC IVRVVEEGRK SQHCSEATQQ ALADMLNKLH  660
LVEDRPPAM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007695.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X2
RefseqXP_011007696.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X2
TrEMBLU5GWD60.0U5GWD6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s20880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6