PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022077.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 706aa    MW: 78405.1 Da    PI: 7.8556
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022077.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.16.2e-22124225199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae +         ++ +  tl  +d +g++W+ ++iyr+ ++r++lt+GW+ Fv+ ++L +gD+vvF   + +++ 
  CCG022077.1 124 FAKTLTQSDANNGGGFSVPRYCAEMIfprldytADPPVQ--TLLAKDVHGETWKCRHIYRGAPRRHLLTTGWSPFVNHKKLVAGDSVVFL--RAENGD 217
                  89*********************999****997555555..8999*********************************************..448888 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+v+r+
  CCG022077.1 218 LCVGVRRA 225
                  9****996 PP
2Auxin_resp101.79.8e-34294376283
   Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a  a+++ +Fe vY+Pra t+eF vk++ v++ ++++++ GmRfkmafetedss++++ +Gtv +v+d+dp+ Wp+S+Wr+L+
  CCG022077.1 294 AVLAANGLPFETVYYPRANTPEFFVKASLVKTVMQIRWCSGMRFKMAFETEDSSRISWfMGTVCSVQDADPLCWPGSPWRLLQ 376
                  667899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-35115230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-29118239IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-19123224No hitNo description
PROSITE profilePS5086312.407124226IPR003340B3 DNA binding domain
PfamPF023621.5E-19124225IPR003340B3 DNA binding domain
SMARTSM010197.2E-19124226IPR003340B3 DNA binding domain
PfamPF065071.1E-28293376IPR010525Auxin response factor
PROSITE profilePS5174514.578619697IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MITFMEAKEI LKEEADKCLD SQLWHACAGG MVQMPAVNSK VFYFPQGHAE HACEPVDFRN  60
LPGASHTLCK VSAIKFMADP ETDEVFAKIR LVPINSNEID LDDQEVAVNG EKEAARDNKK  120
PVSFAKTLTQ SDANNGGGFS VPRYCAEMIF PRLDYTADPP VQTLLAKDVH GETWKCRHIY  180
RGAPRRHLLT TGWSPFVNHK KLVAGDSVVF LRAENGDLCV GVRRAKRAIS GGPESLWNPA  240
LGNPVVPYGG FGAFSREDEH KMMKNGRGNG NGSKSNESLM GRGKVRAESV IQAAVLAANG  300
LPFETVYYPR ANTPEFFVKA SLVKTVMQIR WCSGMRFKMA FETEDSSRIS WFMGTVCSVQ  360
DADPLCWPGS PWRLLQVTWD EPDLLQNVKR VSPWLVELAS HMSAIHLSPF SSPRKKLRLP  420
QHPDFPIDGQ FPMPIFSSNL LQPSSPFGFL PNNVPAGMQG ARHAHYGLPL SDLNLNKLHT  480
GPLRAGFPPL LDHTASLTKA SNIQTIQKPI LNEGVSCELT MSHSTQTSKR ADDVKIPQLV  540
LFGQRIVAEQ YISRSCSNNT GSPVLARNSF FEGKLDKMEN FSEGSVSTLP HRGLSKHSSC  600
EGLQWNKNNN RKNEQSLEIG HCKVFLESED VGRTLDLQLL ESYEELYRKL ADMFGLRNSE  660
KFSNLLYRDD NGITKNIGEE PFSNFSKTAR RLTIVTDSGS DNVGGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-81339732388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT5854790.0KT585479.1 Populus tomentosa auxin response factor 16 (ARF16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007683.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLB9IFN40.0B9IFN4_POPTR; Auxin response factor
STRINGPOPTR_0016s09150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]