PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG021913.3

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TALE

Protein Properties

Length: 1084aa MW: 120663 Da PI: 5.5262

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG021913.3	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.8	3.2e-07	365	398	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + CCG021913.3 365 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 398 469*****************************87 PP
2	ELK	27.3	8.1e-10	319	340	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ CCG021913.3 319 ELKHELKQGYKEKIVDIREEIL 340 9*******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	1.2E-18	152	196	IPR005540	KNOX1
Pfam	PF03790	6.6E-16	154	195	IPR005540	KNOX1
SMART	SM01256	3.7E-28	207	262	IPR005541	KNOX2
Pfam	PF03791	2.4E-19	213	261	IPR005541	KNOX2
PROSITE profile	PS51213	9.969	319	339	IPR005539	ELK domain
SMART	SM01188	6.1E-4	319	340	IPR005539	ELK domain
Pfam	PF03789	2.9E-6	319	340	IPR005539	ELK domain
PROSITE profile	PS50071	11.726	339	402	IPR001356	Homeobox domain
SMART	SM00389	4.7E-11	341	406	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.67E-15	341	404	IPR009057	Homeodomain-like
CDD	cd00086	2.35E-12	342	403	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-24	346	403	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-17	359	398	IPR008422	Homeobox KN domain
Pfam	PF05536	2.9E-155	472	1006	IPR008709	Neurochondrin
SuperFamily	SSF48371	2.38E-5	477	622	IPR016024	Armadillo-type fold
SuperFamily	SSF48371	2.38E-5	676	750	IPR016024	Armadillo-type fold
SuperFamily	SSF48371	2.38E-5	872	999	IPR016024	Armadillo-type fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1084 aa Download sequence Send to blast
MAFHHNLSSQ DLPLHHFTDQ QATENHTAPP NWLNTALLRS QQPPQQQTHH HFTDNNNTNN 60 FLNLHTTTTT ATATTSDSTS HNPVQWLSRS SSSLLNRNHS DVIDDVAAGG DHAIITSISQ 120 ESSELKTMNK SEGEAMVADS GGGEAVVNWQ NARYKADVLT HPLYDQLLSA HVACLRVATP 180 VDQLQRIDAQ LAQSQQVVTK YSALGSHQGL VPDDKELDQF MTHYFLLLCS FKEQLQQHVR 240 VHAMEAVMAC WEIEQSLQSL TGVSPGEGTG ATMSDDDDDQ VDSDANLFVG SLEGADTLGF 300 GPLVPTESER SLMERVRQEL KHELKQGYKE KIVDIREEIL RKRRAGKLPG DTTSVLKAWW 360 QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPSTSTVL KSKRKRPLSK 420 HLSGATPQVK QLINLKTSEY LMVKISLTHK ILQNFRASKT LTLLFSQEQQ QQQTPSLDDC 480 LKLLKGERDE QRLAGLLLVT KFCNGDDLVS LRKVYNAVGV HFLDRLLRTG MCKGSVSGGD 540 NRDMYLQLSV TVLAAFCRVP DIAASKEMVS KIPLILEIMP EVSGSPVLEE CYEFLYLVTT 600 SYEDGATAFY ESVGMKVLAS QMSSLPDGSH TMELAMKIVQ STLRGLSLDV VTNTYVSELS 660 MMVATVARQF ALLHNSLKFE ALHLLSEIFS SKYSKPLCDA LCAMAGNKWP DHMRAGIVAI 720 LQNRVEPAEK VHALILAESV ISIMGEGWLL GQPNLPDLPG SIPADRCFLL VLESARVEVA 780 VLLNDLAYLK YEASKDTSTT VETILLKQRN VAIAFSLVER VIKLTSTMDE VEGSIIGERT 840 LIKVINGLNE TINVVLEYLE DAKEHGQKKG NDLLASVRVV GSYLAETPDA CKEKVRELLD 900 YMLTIEGEDE ASPFHSISFL LPMMCQITMD IEGCEALISS GGYKAVAECL VKLIGPRGNM 960 VGDDGCTFLA CDTVLNLLLK KGQMRFRMDE STFIDLLKAI GYWAEETPFI ISVFRCPWPP 1020 PAPLLEVTLF TISLLDETNL QVCQLIQDMS DMVRKETDLL EIVTSGFSRW AHRFPGLREA 1080 IESA

Sequence ? help Back to Top

Protein Sequence Length: 1084 aa Download sequence Send to blast

MAFHHNLSSQ DLPLHHFTDQ QATENHTAPP NWLNTALLRS QQPPQQQTHH HFTDNNNTNN  60
FLNLHTTTTT ATATTSDSTS HNPVQWLSRS SSSLLNRNHS DVIDDVAAGG DHAIITSISQ  120
ESSELKTMNK SEGEAMVADS GGGEAVVNWQ NARYKADVLT HPLYDQLLSA HVACLRVATP  180
VDQLQRIDAQ LAQSQQVVTK YSALGSHQGL VPDDKELDQF MTHYFLLLCS FKEQLQQHVR  240
VHAMEAVMAC WEIEQSLQSL TGVSPGEGTG ATMSDDDDDQ VDSDANLFVG SLEGADTLGF  300
GPLVPTESER SLMERVRQEL KHELKQGYKE KIVDIREEIL RKRRAGKLPG DTTSVLKAWW  360
QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPSTSTVL KSKRKRPLSK  420
HLSGATPQVK QLINLKTSEY LMVKISLTHK ILQNFRASKT LTLLFSQEQQ QQQTPSLDDC  480
LKLLKGERDE QRLAGLLLVT KFCNGDDLVS LRKVYNAVGV HFLDRLLRTG MCKGSVSGGD  540
NRDMYLQLSV TVLAAFCRVP DIAASKEMVS KIPLILEIMP EVSGSPVLEE CYEFLYLVTT  600
SYEDGATAFY ESVGMKVLAS QMSSLPDGSH TMELAMKIVQ STLRGLSLDV VTNTYVSELS  660
MMVATVARQF ALLHNSLKFE ALHLLSEIFS SKYSKPLCDA LCAMAGNKWP DHMRAGIVAI  720
LQNRVEPAEK VHALILAESV ISIMGEGWLL GQPNLPDLPG SIPADRCFLL VLESARVEVA  780
VLLNDLAYLK YEASKDTSTT VETILLKQRN VAIAFSLVER VIKLTSTMDE VEGSIIGERT  840
LIKVINGLNE TINVVLEYLE DAKEHGQKKG NDLLASVRVV GSYLAETPDA CKEKVRELLD  900
YMLTIEGEDE ASPFHSISFL LPMMCQITMD IEGCEALISS GGYKAVAECL VKLIGPRGNM  960
VGDDGCTFLA CDTVLNLLLK KGQMRFRMDE STFIDLLKAI GYWAEETPFI ISVFRCPWPP  1020
PAPLLEVTLF TISLLDETNL QVCQLIQDMS DMVRKETDLL EIVTSGFSRW AHRFPGLREA  1080
IESA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	395	415	RKRNWHSNPSTSTVLKSKRKR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP770020	0.0	KP770020.1 Populus tomentosa TALE transcription factor (Potri.006G259400) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011036626.1	0.0	PREDICTED: neurochondrin
Refseq	XP_011036627.1	0.0	PREDICTED: neurochondrin
Refseq	XP_011036628.1	0.0	PREDICTED: neurochondrin
TrEMBL	A0A1J7G7X5	0.0	A0A1J7G7X5_LUPAN; Uncharacterized protein
STRING	POPTR_0018s02200.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.2	1e-169	KNOTTED1-like homeobox gene 3