![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG021831.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 632aa MW: 70476.7 Da PI: 6.0698 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 4.8e-13 | 428 | 474 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h ErrRR+++N++f L++++P+ + K++K++iL +++Y+++L+ CCG021831.1 428 SHVLSERRRREKLNKRFMILKSIVPSiS------KVDKVSILDDTIQYLQELE 474 79999*********************66......****************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.6E-49 | 15 | 193 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.323 | 424 | 473 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-17 | 427 | 488 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-16 | 428 | 488 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.00E-13 | 428 | 478 | No hit | No description |
Pfam | PF00010 | 9.7E-11 | 428 | 474 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.1E-16 | 430 | 479 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 632 aa Download sequence Send to blast |
MANELHNQER LPDNLKKQLA LAVRSIQWSY AIFWSNPTGQ SGVLEWADGY YNGDIKTRKT 60 VQSLELNADE LGLQRSEQLR ELYESLSAGE ANPQARRPSA ALSPEDLTDT EWYYLVCMSF 120 VFDSGQGLPG TTFANGHPTW LCNASSADNK IFSRSLLAKT VVCFPFMRGV VELGVSEQVL 180 EDPSLIQHIK TSFLEIPYTV AAKHSSAKSD KELACATFNR EIHDTKPVPV IRCGELDTVS 240 PDDNSNDQAA TDSIMVEGLN GGASQVQSWQ FMDDDFSNLV HHPLNSSDSV SQTIVDPVKL 300 VPVLKDGKVN DQSLQDIQDC NHKKLTALNL QSDDLHYQSV LSCLLKTSHP LILGPNVQNC 360 HRELSFVSWK KAGLMHSQKL KSGTPQKLLK KILFEVPRMH VDGLLDSPEC SSDKVAGGRP 420 EADEIGASHV LSERRRREKL NKRFMILKSI VPSISKVDKV SILDDTIQYL QELERKVEEL 480 ECRRELLEAI TKRKPQDTVE RTSDNCGSNK IGNGKNSLTN KRKAPDIDEM EPDTNHNISK 540 DGSADHIAVS MNKGDVLIEI KCPWKEGILL EIMDAASHLH LDSHSVQSSI MDGILSLTIK 600 SQVWSMDSKS HNGSHRLDIM CLVRKWPPND NP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 3e-17 | 13 | 193 | 7 | 192 | Transcription factor MYC3 |
4rqw_B | 3e-17 | 13 | 193 | 7 | 192 | Transcription factor MYC3 |
4rs9_A | 3e-17 | 13 | 193 | 7 | 192 | Transcription factor MYC3 |
4yz6_A | 3e-17 | 13 | 193 | 7 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 432 | 437 | ERRRRE |
2 | 433 | 438 | RRRREK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation, but, in association with TTG1 and MYB0/GL1, promotes trichome formation, branching and endoreplication. Regulates also trichome cell wall maturation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Activates the transcription of GL2. {ECO:0000269|PubMed:11063707, ECO:0000269|PubMed:12917293, ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14561633, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15590742}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency and UV light. Negatively regulated by MYB66/WER, GL3 and BHLH2 in the developing non-hair cells, and positively regulated by CPC and TRY in the developing hair cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15590742, ECO:0000269|PubMed:17053893}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022679.1 | 0.0 | PREDICTED: transcription factor GLABRA 3 isoform X2 | ||||
Swissprot | Q9FN69 | 0.0 | GL3_ARATH; Transcription factor GLABRA 3 | ||||
TrEMBL | A0A2K2B670 | 0.0 | A0A2K2B670_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s12810.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2444 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41315.1 | 0.0 | bHLH family protein |