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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG021755.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 346aa MW: 38515.7 Da PI: 6.5298 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.7e-19 | 127 | 178 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g+ CCG021755.1 127 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRGA 178 59********.**********72....45*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.55E-30 | 127 | 184 | No hit | No description |
Pfam | PF00847 | 2.5E-12 | 128 | 177 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 128 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.92E-21 | 128 | 185 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.235 | 128 | 185 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-35 | 128 | 191 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 129 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 151 | 167 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MKMDHPVKFT EHRNQTKLAA PFLSNPVQYP KPPKIVRISV TDTYATDSSS DEENEVSRVS 60 SRKRHATRVK KFVNEITIEP SAPPSRTADC VTSDTGLRAR PSRSARKKVG VNVSQARRLP 120 ATAVVGKKFR GVRQRPWGKW AAEIRDPLRR VRLWLGTYDT AEEAAMVYDN AAIQLRGADA 180 LTNFVTPPAR CSPAAAASGY ISGDESNSNH NVNNDNVNVS SPISVLRFSE EAESQSVGSS 240 RETRKAGNEV REVKEDSCVS ENFSDFSEHN SSIDSLFPPT TDIYEFQGSV RGIFEETTFF 300 ADGGFLKDDD FRDIDLDFGF RLSSWNGRDH FQDIGDLIWS DSLIAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-20 | 126 | 184 | 3 | 62 | ATERF1 |
3gcc_A | 5e-20 | 126 | 184 | 3 | 62 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022557.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF1-like | ||||
TrEMBL | A0A2K2B6M7 | 0.0 | A0A2K2B6M7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s13610.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 5e-45 | cytokinin response factor 2 |