PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG021727.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 310aa MW: 34109.3 Da PI: 8.9472 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.4e-18 | 103 | 153 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p + r r++lg+++tae Aa a+++a+ kl+ e CCG021727.1 103 LYRGVRQRN-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRSE 153 59****998.**********954...5*************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.16E-15 | 102 | 162 | No hit | No description |
PROSITE profile | PS51032 | 22.879 | 103 | 160 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 103 | 161 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-31 | 103 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-22 | 103 | 160 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-12 | 104 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 126 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MQENNSSFAF NTADIGSSLS QLILAGGTNT LDSIFSHCQP ARSLTSPAFE PLGSSVYLHQ 60 RDLLQKFSEE NRINTSLSHN LPTNPLQNPV RSSNYLAPTK KKLYRGVRQR NWGKWVAEIR 120 LPQNRMRVWL GTYDTAEAAA YAYDRAAYKL RSEYARLNFP NLKDLANLGF TDCSKLNALK 180 NTVDAKIQAI CQKVKKERAK KNAAKKSDVD GKSTGSKKPV KVDSNASTPS PASSSSSSFS 240 PLFSGDNWGG SELVSPAVSE DGFWKCESSS SPSVSTDCPV MVPQAMEFED CSLARMPSYD 300 PELIWEVLAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-19 | 102 | 160 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-19 | 100 | 160 | 2 | 63 | ATERF1 |
3gcc_A | 3e-19 | 100 | 160 | 2 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022512.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 3e-63 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | B9GXH6 | 0.0 | B9GXH6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s13910.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7181 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 2e-51 | ERF family protein |
Publications ? help Back to Top | |||
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