PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG021636.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 300aa MW: 34688.8 Da PI: 6.2611

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG021636.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158	3.9e-49	21	151	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 ++pGfrFhPtdeelv +yLk+kve+k +++ + ik++d+yk+ePwdLpk +++a+e+e+yfF++r +ky+++ r+nr+t+sg+Wkatg dk+++s + CCG021636.1 21 MAPGFRFHPTDEELVGFYLKRKVEKKLIRI-DLIKHIDVYKYEPWDLPKeaSCSAGERECYFFCRRGRKYKNSVRPNRVTNSGFWKATGIDKPIYSVG 117 579*************************.99**********95346667999**********************************75 PP NAM 97 gel..vglkktLvfykgrapkgektdWvmheyrl 128 + + +glkk+Lv+y+g+a kg+ktdW+mhe+rl CCG021636.1 118 KLHycIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 151 44467*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-51	21	181	IPR003441	NAC domain
PROSITE profile	PS51005	51.177	21	182	IPR003441	NAC domain
Pfam	PF02365	2.4E-25	23	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MELERLITTS KDVEADDDDI MAPGFRFHPT DEELVGFYLK RKVEKKLIRI DLIKHIDVYK 60 YEPWDLPKEA SCSAGERECY FFCRRGRKYK NSVRPNRVTN SGFWKATGID KPIYSVGKLH 120 YCIGLKKSLV YYRGSAGKGT KTDWMMHEFR LPASENTANP TNPDDCNIHE AEVWTLCRIF 180 QRETPFNKKC FSSKQKYVSD SSSSPCESDN RRHTDESFEV SAVDNNVNIE SRATSDQYTY 240 GNNNQLFAAQ LSLRNQVPFT TPYLSFSSQN GDQLFGDENW DELRPMVEFA LDPSMLYSIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-45	7	188	3	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU276018	1e-145	GU276018.1 Populus balsamifera isolate GAL12 haplotype A unknown gene, partial sequence.
GenBank	GU276019	1e-145	GU276019.1 Populus balsamifera isolate GAL12 haplotype B unknown gene, partial sequence.
GenBank	GU276020	1e-145	GU276020.1 Populus balsamifera isolate KUU07 haplotype A unknown gene, partial sequence.
GenBank	GU276021	1e-145	GU276021.1 Populus balsamifera isolate KUU07 haplotype B unknown gene, partial sequence.
GenBank	GU276022	1e-145	GU276022.1 Populus balsamifera isolate POR11 haplotype A unknown gene, partial sequence.
GenBank	GU276023	1e-145	GU276023.1 Populus balsamifera isolate POR11 haplotype B unknown gene, partial sequence.
GenBank	GU276024	1e-145	GU276024.1 Populus balsamifera isolate RNA13 haplotype A unknown gene, partial sequence.
GenBank	GU276025	1e-145	GU276025.1 Populus balsamifera isolate RNA13 haplotype B unknown gene, partial sequence.
GenBank	GU276026	1e-145	GU276026.1 Populus balsamifera isolate STL13 haplotype A unknown gene, partial sequence.
GenBank	GU276027	1e-145	GU276027.1 Populus balsamifera isolate STL13 haplotype B unknown gene, partial sequence.
GenBank	JN706908	1e-145	JN706908.1 Populus trichocarpa isolate CVA01 locus 424060 genomic sequence.
GenBank	JN706909	1e-145	JN706909.1 Populus trichocarpa isolate CJU02 locus 424060 genomic sequence.
GenBank	JN706910	1e-145	JN706910.1 Populus trichocarpa isolate CKR02 locus 424060 genomic sequence.
GenBank	JN706911	1e-145	JN706911.1 Populus trichocarpa isolate CSC01 locus 424060 genomic sequence.
GenBank	JN706913	1e-145	JN706913.1 Populus trichocarpa isolate CKR01 locus 424060 genomic sequence.
GenBank	JN706914	1e-145	JN706914.1 Populus trichocarpa isolate CKR03 locus 424060 genomic sequence.
GenBank	JN706915	1e-145	JN706915.1 Populus trichocarpa isolate CKR04 locus 424060 genomic sequence.
GenBank	JN706916	1e-145	JN706916.1 Populus trichocarpa isolate CWY14 locus 424060 genomic sequence.
GenBank	JN706917	1e-145	JN706917.1 Populus trichocarpa isolate CJU04 locus 424060 genomic sequence.
GenBank	JN706918	1e-145	JN706918.1 Populus trichocarpa isolate CVA02 locus 424060 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011022380.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	1e-81	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A2K2B7E1	0.0	A0A2K2B7E1_POPTR; Uncharacterized protein
STRING	POPTR_0003s14950.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	1e-81	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]