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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG021627.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 27880.4 Da PI: 8.2391 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 124 | 174 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ taeeA a+++a+ +++g CCG021627.2 124 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAGLAYDRAAYRMRG 174 7********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-31 | 123 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-13 | 124 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.683 | 124 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-22 | 124 | 184 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.1E-36 | 124 | 188 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.45E-29 | 124 | 183 | No hit | No description |
PRINTS | PR00367 | 1.7E-13 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-13 | 164 | 184 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MNEVTSLYEF SALSHHRQHR SPSFSSLISC LTETWGDLPL KVDDSEDMVI YNSLRDAVRF 60 GWSPLDLTSP TATTATTTIT RTTGVVKAEP GCELEPEAEP RKLVQEAGLN EAAVSKKVVA 120 KGRHYRGVRQ RPWGKFAAEI RDPAKNGARV WLGTYETAEE AGLAYDRAAY RMRGSKALLN 180 FPHKIGSNEP DPVRVTTKRR EPETGLPAVD SGSAKTRRIL VANGDELERE RGSNVFQVAH 240 HIMPLGEQLL VS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-38 | 120 | 189 | 1 | 70 | ATERF1 |
3gcc_A | 6e-38 | 120 | 189 | 1 | 70 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216594 | 0.0 | AC216594.1 Populus trichocarpa clone POP017-A13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022365.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
Swissprot | Q9LW50 | 3e-90 | ERF2_NICSY; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A2K2B7F0 | 1e-146 | A0A2K2B7F0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s15030.1 | 1e-165 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2239 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 3e-62 | ethylene responsive element binding factor 1 |