PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021627.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 252aa    MW: 27880.4 Da    PI: 8.2391
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021627.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18124174255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ taeeA  a+++a+ +++g
  CCG021627.2 124 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAGLAYDRAAYRMRG 174
                  7********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-31123183IPR001471AP2/ERF domain
PfamPF008471.7E-13124174IPR001471AP2/ERF domain
PROSITE profilePS5103223.683124182IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22124184IPR016177DNA-binding domain
SMARTSM003806.1E-36124188IPR001471AP2/ERF domain
CDDcd000181.45E-29124183No hitNo description
PRINTSPR003671.7E-13125136IPR001471AP2/ERF domain
PRINTSPR003671.7E-13164184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MNEVTSLYEF SALSHHRQHR SPSFSSLISC LTETWGDLPL KVDDSEDMVI YNSLRDAVRF  60
GWSPLDLTSP TATTATTTIT RTTGVVKAEP GCELEPEAEP RKLVQEAGLN EAAVSKKVVA  120
KGRHYRGVRQ RPWGKFAAEI RDPAKNGARV WLGTYETAEE AGLAYDRAAY RMRGSKALLN  180
FPHKIGSNEP DPVRVTTKRR EPETGLPAVD SGSAKTRRIL VANGDELERE RGSNVFQVAH  240
HIMPLGEQLL VS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-38120189170ATERF1
3gcc_A6e-38120189170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165940.0AC216594.1 Populus trichocarpa clone POP017-A13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022365.10.0PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ9LW503e-90ERF2_NICSY; Ethylene-responsive transcription factor 2
TrEMBLA0A2K2B7F01e-146A0A2K2B7F0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s15030.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-62ethylene responsive element binding factor 1