PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021599.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 340aa    MW: 38235.2 Da    PI: 6.7712
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021599.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.8e-182774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W+++Ede+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
      CCG021599.1 27 RGLWSPDEDEKLIKYITTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 74
                     788*******************************************97 PP
2Myb_DNA-binding52.11.5e-1680123146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++E+ ++v+ +++lG++ W+ Ia++++ gRt++++k++w++
      CCG021599.1  80 RGSFTAQEESIIVEIHRMLGNR-WAQIAKHLP-GRTDNEVKNFWNS 123
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-261877IPR009057Homeodomain-like
PROSITE profilePS5129417.8862274IPR017930Myb domain
SuperFamilySSF466893.19E-2925121IPR009057Homeodomain-like
SMARTSM007179.4E-132676IPR001005SANT/Myb domain
PfamPF002497.2E-162774IPR001005SANT/Myb domain
CDDcd001673.46E-113074No hitNo description
PROSITE profilePS5129425.1875129IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2578130IPR009057Homeodomain-like
SMARTSM007172.3E-1579127IPR001005SANT/Myb domain
PfamPF002494.5E-1580123IPR001005SANT/Myb domain
CDDcd001673.53E-1182122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVSFDDMQEG LGNKTGHQCC SKRKVKRGLW SPDEDEKLIK YITTHGHGSW SSVPKLAGLQ  60
RCGKSCRLRW INYLRPDLKR GSFTAQEESI IVEIHRMLGN RWAQIAKHLP GRTDNEVKNF  120
WNSCIKKKLI AQGLDPKTHN LLSNNYKHNN NNNACKLSYQ YSHQQTTSTF TVDSQINDIS  180
MDMKATLIPF PMIPPVPDTN PPCPPLLNKF SSVSTCEYQN PNTLASLESG SMSSIGSVPL  240
SSSTSHPSEF GMLDESCMWA GGYELIQSIK PEKDQPEQQV ETIEKANELI SAGQNMDASF  300
ETSTFDFDFV ESTLLPCGMY YNPSPIVQPA WDSWALQEKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30271297108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022307.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A2I4KK680.0A0A2I4KK68_POPTR; MYB family protein
STRINGPOPTR_0003s15440.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.17e-79myb domain protein 67