PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG021155.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 436aa MW: 47854 Da PI: 7.2666

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG021155.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33	1.1e-10	364	409	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k + a++L +Ave+Ik+Lq CCG021155.1 364 SIAERVRRTRISERMRKLQELFPNM----DKQTNTADMLDLAVEHIKDLQ 409 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.081	358	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-14	361	421	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.32E-11	362	413	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.3E-13	363	421	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-10	364	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-7	364	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MMYGIGGFQG SSKEDMNLLY SSSFKYSDGE LRRSQEFMDL NPYHYHQQQQ QIQQNSGLMR 60 YRSAPSSILE SLVNGTSGHD GGGIESGDYR YLRSSSPEMD TVLARFMSSC NGSGDSSSQN 120 LQEFGERPAI KQEGGDSEMV YQSLPGHNLV TDNSVSVGNS MDSAFNVMSS MALENSMQAT 180 KMSTANGSNL ARQNSSPAGL FSDLGVDNGF VVMREGGSFR AGNGTNGEAS PTNKLRRHVN 240 FSSGQRMLPQ IAEIGEECIG GRSPEGDVSE ARYMSRFTSD SWDGASLSGL KRQRDNDGNM 300 FSGLNTLDNQ DGNSGNRVTG LTHHLSLPKT LSETATIEKF LDFQGNSVPC KIRAKRGFAT 360 HPRSIAERVR RTRISERMRK LQELFPNMDK QTNTADMLDL AVEHIKDLQK QVKTLTDTKA 420 KCTCSSKQKQ YSSPSA

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MMYGIGGFQG SSKEDMNLLY SSSFKYSDGE LRRSQEFMDL NPYHYHQQQQ QIQQNSGLMR  60
YRSAPSSILE SLVNGTSGHD GGGIESGDYR YLRSSSPEMD TVLARFMSSC NGSGDSSSQN  120
LQEFGERPAI KQEGGDSEMV YQSLPGHNLV TDNSVSVGNS MDSAFNVMSS MALENSMQAT  180
KMSTANGSNL ARQNSSPAGL FSDLGVDNGF VVMREGGSFR AGNGTNGEAS PTNKLRRHVN  240
FSSGQRMLPQ IAEIGEECIG GRSPEGDVSE ARYMSRFTSD SWDGASLSGL KRQRDNDGNM  300
FSGLNTLDNQ DGNSGNRVTG LTHHLSLPKT LSETATIEKF LDFQGNSVPC KIRAKRGFAT  360
HPRSIAERVR RTRISERMRK LQELFPNMDK QTNTADMLDL AVEHIKDLQK QVKTLTDTKA  420
KCTCSSKQKQ YSSPSA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00646	PBM	Transfer from LOC_Os08g39630	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024463708.1	0.0	transcription factor bHLH130 isoform X1
TrEMBL	A0A3N7FJ22	0.0	A0A3N7FJ22_POPTR; Uncharacterized protein
STRING	POPTR_0009s06910.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-71	bHLH family protein