PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG021130.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 538aa MW: 58432.2 Da PI: 6.6975

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG021130.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.3	8.5e-30	207	266	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a Cpv+k+v+r+aed++++++tYeg+Hnh+ CCG021130.1 207 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApLCPVRKQVQRCAEDTSILITTYEGTHNHP 266 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-31	193	268	IPR003657	WRKY domain
SuperFamily	SSF118290	1.06E-26	199	268	IPR003657	WRKY domain
PROSITE profile	PS50811	28.082	202	268	IPR003657	WRKY domain
SMART	SM00774	4.5E-36	207	267	IPR003657	WRKY domain
Pfam	PF03106	4.2E-26	208	266	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MSSSGGAAIE ERAVQFGLTS REDSSSSQEA KKEEVIESAK SEMGDVREEN HRLKMMLERI 60 EKDYQSLQLR FFDILQHETS SKQSTDSAPS HDETEESNEL VSLCLGRSPS EPKKEDKSTN 120 SAKSRENEEL KANLTLGLDS KILTSTETVS NPSPAESVEE PKEEAGETWP PSKIIPKRNG 180 DHDEAAQQSQ AKRARVCVRT RCDTPTMNDG CQWRKYGQKI SKGNPCPRAY YRCTVAPLCP 240 VRKQVQRCAE DTSILITTYE GTHNHPLPVS ATAMASTTSA AASMLLTGSS TSQQGLGSHI 300 NATSARTELN GLSFSLHDHL RAKQIYFPNS SSPTFPTITL DLTTSPSTST TPFGRFSSSF 360 SSTSRYPSTS LNFSSTEPNS LPPIWGNGLH NYGTRSYNHQ QLYQSFMEKN HPAAASQQVL 420 TDTLTKAITS DPSFRTVIAT AISSMIGGGG SANANNRNQR AGDQNFFGQN LNFGETMTTS 480 AFSINSLSQN GKGCASSCFN GLSSSTSQKG SSQVQPALPF SVFNSASMPN NDNEEHKS

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MSSSGGAAIE ERAVQFGLTS REDSSSSQEA KKEEVIESAK SEMGDVREEN HRLKMMLERI  60
EKDYQSLQLR FFDILQHETS SKQSTDSAPS HDETEESNEL VSLCLGRSPS EPKKEDKSTN  120
SAKSRENEEL KANLTLGLDS KILTSTETVS NPSPAESVEE PKEEAGETWP PSKIIPKRNG  180
DHDEAAQQSQ AKRARVCVRT RCDTPTMNDG CQWRKYGQKI SKGNPCPRAY YRCTVAPLCP  240
VRKQVQRCAE DTSILITTYE GTHNHPLPVS ATAMASTTSA AASMLLTGSS TSQQGLGSHI  300
NATSARTELN GLSFSLHDHL RAKQIYFPNS SSPTFPTITL DLTTSPSTST TPFGRFSSSF  360
SSTSRYPSTS LNFSSTEPNS LPPIWGNGLH NYGTRSYNHQ QLYQSFMEKN HPAAASQQVL  420
TDTLTKAITS DPSFRTVIAT AISSMIGGGG SANANNRNQR AGDQNFFGQN LNFGETMTTS  480
AFSINSLSQN GKGCASSCFN GLSSSTSQKG SSQVQPALPF SVFNSASMPN NDNEEHKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	194	268	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011005079.1	0.0	PREDICTED: probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	1e-111	WK72A_SOLLC; WRKY transcription factor 72A
Swissprot	Q9LXG8	1e-111	WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBL	A0A2K1X4U1	0.0	A0A2K1X4U1_POPTR; Uncharacterized protein
STRING	POPTR_0017s11570.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	1e-89	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]