PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021104.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 245aa    MW: 27253.7 Da    PI: 9.3053
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021104.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+t+Ed++l+d+++ +G g+W++ ++  g++R++k+c++rw +yl
      CCG021104.1 13 KGAWSTQEDQKLIDYIQTHGEGCWRSLPEAAGLHRCGKSCRLRWINYL 60
                     79********************************************97 PP
2Myb_DNA-binding52.79.9e-1766111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
      CCG021104.1  66 RGNFGQDEEDLIIKLHALLGNR-WALIAGRLP-GRTDNEVKNYWNSHL 111
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-23462IPR009057Homeodomain-like
PROSITE profilePS5129415.475860IPR017930Myb domain
SuperFamilySSF466892.3E-2811107IPR009057Homeodomain-like
SMARTSM007171.7E-131262IPR001005SANT/Myb domain
PfamPF002492.5E-151360IPR001005SANT/Myb domain
CDDcd001672.87E-101560No hitNo description
PROSITE profilePS5129425.8761115IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.7E-2663116IPR009057Homeodomain-like
SMARTSM007176.2E-1665113IPR001005SANT/Myb domain
PfamPF002492.3E-1566111IPR001005SANT/Myb domain
CDDcd001672.55E-1168111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MRKPCCDKQG NNKGAWSTQE DQKLIDYIQT HGEGCWRSLP EAAGLHRCGK SCRLRWINYL  60
RPDIKRGNFG QDEEDLIIKL HALLGNRWAL IAGRLPGRTD NEVKNYWNSH LKKKLINMGI  120
DPNNHRLNQI LPRPQAEPPA PVIATSNTTG SKNNAAASKP KKLSNGDSDR VSDTATCLED  180
DYESLETQQV ATSGSSSINI DLNIAAPASP GHRTTFGNKQ QNCKWGKTSQ VERDPSSLPT  240
LLLFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-271211526128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7233920.0KP723392.1 Populus tremula x Populus tremuloides clone INRA 353-38 R2R3 MYB flavonoid repressor protein (MYB182) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007260.10.0PREDICTED: transcription repressor MYB6-like
SwissprotQ388512e-74MYB6_ARATH; Transcription repressor MYB6
TrEMBLB9H3971e-173B9H397_POPTR; Uncharacterized protein
STRINGPOPTR_0004s08650.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-73myb domain protein 6