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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG021062.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 379aa MW: 41810.2 Da PI: 4.5371 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.6e-18 | 120 | 169 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ +++++g CCG021062.1 120 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDSEARRIRG 169 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.525 | 120 | 177 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-36 | 120 | 183 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-21 | 120 | 179 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-32 | 120 | 179 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.05E-31 | 120 | 178 | No hit | No description |
PRINTS | PR00367 | 3.6E-11 | 121 | 132 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-11 | 121 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MCGGAIISDF IAPTTTARSS RRLTSGFEWL GLKKPFNNKH LKPVVADPED DFEADFQEFK 60 DESDADEDYD VFADAKPFAF SASASEPAKK RGLPRGSTAV KSAGSSGLAE KSAKRKRKNQ 120 FRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DSEARRIRGK KAKVNFPDEA 180 PCASAKHPIK ENSQKRLTKA NLSQDFSYLS NSETDYNNMG FVEEKPQVSQ FGIMNSFPAS 240 GDSGVTPLTP DNASMYFNSD KESNSFDCDF GWGEQGPEIL SVLAATPEVD ESVFVDANPK 300 ELESFSENTA PVEEKNGKSL SEELLAFDNQ LMNLQMPDLV GNWEASLDSF LNGDTTQDGT 360 NAVDLWSFED FPSMVGGVY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 119 | 185 | 13 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146299 | 0.0 | EF146299.1 Populus trichocarpa clone WS0116_P10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011036532.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_011036533.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | A9PDD2 | 0.0 | A9PDD2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s06930.2 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4808 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 3e-63 | related to AP2 12 |