 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
CCG020918.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
WRKY |
| Protein Properties |
Length: 309aa MW: 34430 Da PI: 6.0484 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CCG020918.1 | genome | LZU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 98.3 | 4.8e-31 | 118 | 174 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
Dgy+WrKYGqK++k+s++prsYYrCt ++C +kk+vers+edp++++itYeg H h
CCG020918.1 118 GDGYKWRKYGQKSIKNSTHPRSYYRCTNRRCGAKKQVERSSEDPDTLVITYEGLHLH 174
5******************************************************99 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MEGEVNSSSW FSESEEDELV RELLDDVSPF FFLPEEKNQS KAASPTPRNE AAMNQLISQV 60
YSGPTMQDIE NALSMTSRKD QPEPVSQARF SLLQKGLSKI ENNKYTVKLK SCDNVVAGDG 120
YKWRKYGQKS IKNSTHPRSY YRCTNRRCGA KKQVERSSED PDTLVITYEG LHLHFAHPYF 180
LLNQPQHGDP PSKKPKRTIS EDEFQAHETR QPPEQGQECS THVTSPGSLP SSSTADDYMQ 240
ESDLGAVGPR GLLEDVVPFM IRNPSNYNVS SYSSSSSHRS PPASPSSSLS WSPNLSHSCF 300
DVGINTSIG
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1wj2_A | 2e-18 | 119 | 174 | 19 | 74 | Probable WRKY transcription factor 4 |
| 2ayd_A | 2e-18 | 116 | 174 | 13 | 71 | WRKY transcription factor 1 |
| 2lex_A | 2e-18 | 119 | 174 | 19 | 74 | Probable WRKY transcription factor 4 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JN117930 | 0.0 | JN117930.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY34) mRNA, complete cds. |
