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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG020794.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 293aa MW: 32045.7 Da PI: 4.8213 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.4e-19 | 38 | 86 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g CCG020794.1 38 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 86 67******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.84E-30 | 37 | 93 | No hit | No description |
PROSITE profile | PS51032 | 20.705 | 37 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-34 | 37 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-29 | 38 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-8 | 38 | 49 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-21 | 38 | 95 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.7E-12 | 40 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-8 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MDFTYSTKTN STPSPSKTKR KQQQQQHQNQ QEQQEVRFLG VRRRPWGRYA AEIRDPSTKE 60 RHWLGTFDTA EEAALAYDRA ARSMRGSKAR TNFVYSDMPP ASSVTSIISP DESQHDNSAL 120 FSPPPQHNSH QNDTSYQQLY FSQDQHPFNA HAYGKSNSNW LAGGAGWVQG FGAGAGYGPC 180 GSNEPNSAGS LDVASGLNYL SNTDNIELPP LPPDVNSSCN GCDMGREFWN DTGFLGFPEE 240 QIDDVNGLEV SGSILGFASN DFGLHGSLFG IVPSVSNTVT DGFDLGSSST FYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-19 | 38 | 93 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011036214.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | B9GMV6 | 0.0 | B9GMV6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s12820.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28160.1 | 6e-36 | ERF family protein |