PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020765.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 870aa    MW: 97239.8 Da    PI: 6.4872
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020765.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.3e-23211312199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k lt sd++++g +++ +++a+e+      +++++  ++l+ +d++g++W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + +++el
  CCG020765.1 211 FCKMLTASDTSTHGGFSVLRRHADEClppldmSLQPPA-QELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSLFVSAKKLVAGDAFIFL--RGETEEL 305
                  89*****************************9666665.59************************************************..3489999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +v+v+r+
  CCG020765.1 306 RVGVRRA 312
                  ****985 PP
2Auxin_resp75.11.9e-25337395159
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl 59 
                  ++ha+st+s+F+v+Y+Pr+s++eF+++++k+++++k+++++GmRfkm+fe e+++e+r+
  CCG020765.1 337 VWHAVSTGSMFTVYYKPRTSPAEFIIPIDKYKESVKINYAIGMRFKMKFEAEEAPEQRV 395
                  79******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-38203326IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-39206340IPR015300DNA-binding pseudobarrel domain
CDDcd100174.90E-20209311No hitNo description
PROSITE profilePS5086311.617211313IPR003340B3 DNA binding domain
PfamPF023625.9E-21211312IPR003340B3 DNA binding domain
SMARTSM010191.5E-21211313IPR003340B3 DNA binding domain
PfamPF065071.7E-21338395IPR010525Auxin response factor
PROSITE profilePS5174522.836704787IPR000270PB1 domain
SuperFamilySSF542772.16E-10705782No hitNo description
PfamPF023091.1E-7750796IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MAATIAETVA EERESEAEKQ RKDSLIIRSD YFYYFSSPYE AKQIFEVVAL LLLLLQEKQK  60
IISIADVSLS VENRSLYSVD NKRNGIARGS SSFPLACEGS EDALYKELWH ACAGPLVSVP  120
LQGELVYYFP QGHIEQVEAS TNQVADDLQM PAYNLPPKIL CRVVNVQLKA ELDTDEVFAQ  180
VILLPVAEQD VDLVEKEDLP PPSTRPRVHS FCKMLTASDT STHGGFSVLR RHADECLPPL  240
DMSLQPPAQE LVAKDLHGNE WRFRHIFRGQ PRRHLLQSGW SLFVSAKKLV AGDAFIFLRG  300
ETEELRVGVR RALSQPSNVP SSVMSSHSMH IGILATVWHA VSTGSMFTVY YKPRTSPAEF  360
IIPIDKYKES VKINYAIGMR FKMKFEAEEA PEQRVSPWKI EPALAPSLDP VPGCQSKRHR  420
SNMATSSADS SAPTKKDNEP SRHLQHQEIL TLRNTHAGKN YSDSKHNPAQ ALFQGKDQTA  480
FDNRNFGPDD KIPQAMHGAK LMSLTAGPGT LHESYESTRP FFELNSDDVD RPSKLNETGM  540
FNCHSAPLLY LGHPFNMMAS RMEVHVAKDK DIQQQRGSWF SPLPYADNSS HPLGSKPQHL  600
PFQQYNKGTS KDGNCKLFGF SLFGNPMAAE PAIIHRHSTE KEQINVASDH LQFLGSEGFL  660
EQAKHPKHVR PDEQGNIFQA SALHSKDVQG MPEGDSTTRC VKVVNYLNVV YKQGTAVGRS  720
LDLAKFNGYN ELTAELDQIF EFHGELVAPN KEWLIVFTDD EGDLMLVGDD PWQEFCSMVR  780
RIFVFTREEI NRMEPRSLNL EAGGNSRSAD QLVDLVEDGT SKHLPAASQK AEKVAQTKFL  840
HCGHDGNVEA GVMSSSKPFS SYAQRGLFGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-13910239617309Auxin response factor 1
4ldw_A1e-13910239617309Auxin response factor 1
4ldw_B1e-13910239617309Auxin response factor 1
4ldx_A1e-13910239617309Auxin response factor 1
4ldx_B1e-13910239617309Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084821e-155AC208482.1 Populus trichocarpa clone JGIACSB13-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299344.20.0auxin response factor 2B isoform X1
RefseqXP_024445165.10.0auxin response factor 2B isoform X1
SwissprotQ94JM30.0ARFB_ARATH; Auxin response factor 2
TrEMBLB9GMS50.0B9GMS5_POPTR; Auxin response factor
STRINGPOPTR_0001s13110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32813366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.40.0auxin response factor 2
Publications ? help Back to Top
  1. Chao WS,Doğramaci M,Foley ME,Horvath DP,Anderson JV
    Selection and validation of endogenous reference genes for qRT-PCR analysis in leafy spurge (Euphorbia esula).
    PLoS ONE, 2012. 7(8): p. e42839
    [PMID:22916167]
  2. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Lyons R, et al.
    Fusarium oxysporum triggers tissue-specific transcriptional reprogramming in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(4): p. e0121902
    [PMID:25849296]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Zhao S,Zhang ML,Ma TL,Wang Y
    Phosphorylation of ARF2 Relieves Its Repression of Transcription of the K+ Transporter Gene HAK5 in Response to Low Potassium Stress.
    Plant Cell, 2016. 28(12): p. 3005-3019
    [PMID:27895227]
  8. Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z
    ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis .
    J Integr Plant Biol, 2017. 59(1): p. 30-43
    [PMID:28074634]
  9. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  10. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  11. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]
  12. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  13. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  14. Sarkar Das S, et al.
    Expression dynamics of miRNAs and their targets in seed germination conditions reveals miRNA-ta-siRNA crosstalk as regulator of seed germination.
    Sci Rep, 2018. 8(1): p. 1233
    [PMID:29352229]