PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020759.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 346aa    MW: 39643.9 Da    PI: 8.8247
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020759.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09185231454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h+ +Er RR+ri  ++  L++l+P +    ++   Ka iL + ++Y++sL
  CCG020759.1 185 SHSLAERVRRERISAKMKLLQSLVPGC----DQITGKALILDEIIRYVQSL 231
                  8*************************9....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.52E-7179235No hitNo description
SuperFamilySSF474591.96E-14179246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.964181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14182242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6185231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-7187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd092721.70E-25275338No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAAFPYQHQH LAFLVDEFQP NPNTENDVSS FLLEQATIAS GAIFSPNLTH EYLQESTLHA  60
ERILETIHDD ENFSEKVHFT STINYSPAIV NHNSSSPSMV VGLDFSEEDQ VTQVMTPTMG  120
QMRKQSLPTK KVKKESKHEK RNPKSSFSTN LERERPTKRQ KKVPPLEHPT GYVHVRARRG  180
EATDSHSLAE RVRRERISAK MKLLQSLVPG CDQITGKALI LDEIIRYVQS LKDRVGSLEA  240
ELVLVNEIVI NDFKVSHNME TQAWQVETYG GAQAHKQEKI PLYYDSQSAL HIVRNPAFHS  300
RIKHIDVQYH FVREMVEKRS VDFQKVHTKK NPADALIKLV NTNKYI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2128464e-70AC212846.1 Populus trichocarpa clone POP034-A11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036220.10.0PREDICTED: transcription factor bHLH63-like
TrEMBLA0A3N7E7N80.0A0A3N7E7N8_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16300.12e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16101510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.27e-35bHLH family protein