PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG020746.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 297aa MW: 33556.2 Da PI: 9.6734

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG020746.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167	6.6e-52	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evd++k++PwdLp e+e yfFs+r+ ky++g+r+nrat sgyWkatg dk+++++ ++ CCG020746.1 14 LPPGFRFHPTDEELVVQYLKRKVFACPLPA-SIIPEVDVCKSDPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKQIVTSkGN 107 79**************************.89***********54...46799*****************************9988577 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLvfy+g+ p+g++tdW+mheyrl CCG020746.1 108 QAVGMKKTLVFYRGKPPHGTRTDWIMHEYRL 138 78*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-60	9	174	IPR003441	NAC domain
PROSITE profile	PS51005	57.694	14	174	IPR003441	NAC domain
Pfam	PF02365	3.0E-27	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MEKLSFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFACP LPASIIPEVD VCKSDPWDLP 60 GDLEQERYFF STREAKYPNG NRSNRATGSG YWKATGIDKQ IVTSKGNQAV GMKKTLVFYR 120 GKPPHGTRTD WIMHEYRLAS TETTACNALK NKNSTQGPVV VPMENWVLCR IFLKKRGTKN 180 EEENIQVGND NRLPKLRATE PVFYDFMTKE KTTDLNLAPS SSSSGSSGIT EEGFWLLNQN 240 SHLKQSNACV FRVSSLSSAW RNDATQWDVS VLLGLPINGR AIISTSIRRW IVNDHLD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-51	12	175	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-51	12	175	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-51	12	175	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-51	12	175	15	166	NO APICAL MERISTEM PROTEIN
3swm_A	8e-51	12	175	18	169	NAC domain-containing protein 19
3swm_B	8e-51	12	175	18	169	NAC domain-containing protein 19
3swm_C	8e-51	12	175	18	169	NAC domain-containing protein 19
3swm_D	8e-51	12	175	18	169	NAC domain-containing protein 19
3swp_A	8e-51	12	175	18	169	NAC domain-containing protein 19
3swp_B	8e-51	12	175	18	169	NAC domain-containing protein 19
3swp_C	8e-51	12	175	18	169	NAC domain-containing protein 19
3swp_D	8e-51	12	175	18	169	NAC domain-containing protein 19
4dul_A	7e-51	12	175	15	166	NAC domain-containing protein 19
4dul_B	7e-51	12	175	15	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP770012	0.0	KP770012.1 Populus tomentosa apical meristem (NAM) family protein (Potri.001G061200) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011036132.1	1e-167	PREDICTED: NAC domain-containing protein 18-like
Swissprot	Q9FY93	1e-103	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	B9GMQ3	1e-163	B9GMQ3_POPTR; NAC family protein
STRING	POPTR_0001s13380.1	1e-164	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-104	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]