PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG020722.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SBP | ||||||||
Protein Properties | Length: 376aa MW: 41248.8 Da PI: 9.2112 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.6 | 5.7e-41 | 87 | 163 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe+hsk+++v+++g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+ CCG020722.1 87 CLVDGCTSDLSKCRDYHRRHKVCEFHSKSSQVFIKGQEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQP 163 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.0E-33 | 83 | 148 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.906 | 84 | 161 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-38 | 85 | 166 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.2E-30 | 87 | 160 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MGYNFKTPWE LAELEKQSSP YFTQITVSSS LTVPQATGYC SVDLKLGNSG NFKDKYKDPG 60 GSLMESSSSG SSKRARTPNN ATLVPSCLVD GCTSDLSKCR DYHRRHKVCE FHSKSSQVFI 120 KGQEQRFCQQ CSRFHSLGEF DEGKRSCRKR LDGHNRRRRK PQPDSLSVNS ARIFPNQGTR 180 YLHFGSSQIF STSAMSSAWT GAAKAESDPM LYTSQSSMNF DGRKNLFPVS LSPSYKGGKQ 240 FPFLQGTSST LPGDSIRLNA NSTLGNIGNS QKIFSDGLNR VIDSNRALSL LSSPPSETRD 300 IRLSHIVQPD LNPPAQSLIP SLNYNDGLGI ESEPVGPVLA SDGSSNSNPH GQHVFQIGPD 360 WLSANGSHQT LSFSWE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-30 | 87 | 160 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 160 | KRSCRKRLDGHNRRRRKP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011036101.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_011036102.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A385JHL3 | 0.0 | A0A385JHL3_POPTO; Squamosa promoter-binding protein-like | ||||
TrEMBL | B9GMM7 | 0.0 | B9GMM7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s13630.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2591 | 33 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 3e-48 | SBP family protein |