PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG020635.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 281aa MW: 31856.2 Da PI: 4.5441

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG020635.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.2	1.9e-40	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ e+++am+++++++++ra+dPv G++++i++lq+q+e ++ael+ + CCG020635.1 14 ACAACKYQRRKCAPDCILAPYFPHNRQRQFLNAHKLFGVSNISKIIKNLNPPEKDEAMRTIIFQSDVRANDPVGGCYRMIRELQRQIEYTRAELDFVL 111 7*********************************************************************************************9887 PP DUF260 99 ee 100 ++ CCG020635.1 112 HQ 113 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.114	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-37	14	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MSNISRTGNS TTQACAACKY QRRKCAPDCI LAPYFPHNRQ RQFLNAHKLF GVSNISKIIK 60 NLNPPEKDEA MRTIIFQSDV RANDPVGGCY RMIRELQRQI EYTRAELDFV LHQLAIYRAQ 120 AAAQQQTQLI QAQAAAAAAA AAPDHQTDHD CQSIIITDTF DMYDPVMQYH DQYPQEHQDQ 180 QEFVIHNPDN NQLHLQDQDP ANAWATAANL QDISSLSISS SPNYLDDQLK QAYNGEDHCS 240 TQDDNLKPIL DVNDDVNFEP DDQDEVVDMR FVPSTQLLMS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-27	15	117	12	114	LOB family transfactor Ramosa2.1
5ly0_B	5e-27	15	117	12	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216467	0.0	AC216467.1 Populus trichocarpa clone POP034-D10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000803.1	0.0	PREDICTED: LOB domain-containing protein 7
TrEMBL	A0A2K2B189	0.0	A0A2K2B189_POPTR; Uncharacterized protein
STRING	POPTR_0003s04520.1	1e-178	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	5e-59	LOB domain-containing protein 22