PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020514.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 437aa    MW: 48700.1 Da    PI: 8.6553
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020514.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.72.9e-112552921954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +e++ LA+++gL+ +qV++WF N R +
  CCG020514.1 255 FEHflHPYPTDSEKQALAQQTGLSRTQVSNWFINARVR 292
                  665559******************************88 PP
2BELL83.72.3e-27124192472
         BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e+q k +kL+ +l+eV++rYk y++q+q v++sFe+vaglg+a+pY+  A k + +hF +Lk+a+ ++i
  CCG020514.1 124 EHQWKNSKLILMLDEVYRRYKLYCQQMQSVVASFETVAGLGNAAPYVCYAVKIVLKHFTSLKNALLDKI 192
                  89***************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.4E-3068190IPR006563POX domain
PfamPF075261.9E-2973188IPR006563POX domain
PROSITE profilePS5007112.649233296IPR001356Homeobox domain
SMARTSM003899.9E-13236300IPR001356Homeobox domain
CDDcd000866.00E-14236297No hitNo description
Gene3DG3DSA:1.10.10.601.5E-28239300IPR009057Homeodomain-like
SuperFamilySSF466892.31E-18239304IPR009057Homeodomain-like
PfamPF059209.7E-19253292IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MNPSQSSSFS SLQTLKDMNY QPLTSQGLSL CLSFQLDNQR YNAVSVSGDY PKQNGEMRSS  60
VVPLGPFTGY ASILTSSRFL KPAQQILDEI CGVINCANAN FPLDGLSESE ITRESIAFLS  120
GGVEHQWKNS KLILMLDEVY RRYKLYCQQM QSVVASFETV AGLGNAAPYV CYAVKIVLKH  180
FTSLKNALLD KIQFTGRTFA DSIVTKEKSP RYGKNERGIG NQNPTLNLNF IQHSVWRSQR  240
GLPDHAVAVL KTWLFEHFLH PYPTDSEKQA LAQQTGLSRT QVSNWFINAR VRLWKPMVEE  300
VHMLESQQTQ APSETVNQGA NMPSDLPLKK QPRSTSHQNT NQTTRARSLN ELAEVSKQRQ  360
GPVNIYDNNF SGNYHTAGVS GSKGVSLALG LPQNNGIDLS WPLPMSIPHH INVEMIGMMD  420
SAPATGFELE KQHFGKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A5e-16237293865Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036042.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM82e-71BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLB9HT490.0B9HT49_POPTR; Uncharacterized protein
STRINGPOPTR_0008s06130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-73TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]