PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020484.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 293aa    MW: 33412.6 Da    PI: 6.8014
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020484.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.66e-13121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
      CCG020484.1 121 PWTEDEHRRFLMGLLKHGKGDWRNISRNFVVSKTPTQVASHAQKY 165
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.7071772IPR017884SANT domain
SMARTSM007171.3E-41870IPR001005SANT/Myb domain
SuperFamilySSF466894.93E-102074IPR009057Homeodomain-like
CDDcd001671.07E-52167No hitNo description
PROSITE profilePS5129418.827114170IPR017930Myb domain
SuperFamilySSF466897.48E-16115170IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-17117169IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.6E-10118164IPR009057Homeodomain-like
SMARTSM007173.2E-10118168IPR001005SANT/Myb domain
CDDcd001673.59E-8121166No hitNo description
PfamPF002492.8E-10121165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
METLNPSCYM SNSNWFTQTT EWTREENKEF EIALAIFDEH EPDRWLKVAA MIPGKTVYDV  60
IKQYKELEED VSDIEAGRVP VPGYLSSSFT FQLVGNSNFD AYRKRSLTAK SADQQRKKGV  120
PWTEDEHRRF LMGLLKHGKG DWRNISRNFV VSKTPTQVAS HAQKYFIRQQ LSGVKDKRRP  180
SIHDITTVNL ADATTPSDGD EASSLDQSDL LLSQQKPAGM QKVLIDWDEA KDGSIMVFDS  240
THEDLFKSSP YEIPSNGLKF QGQNLCVGAH HGARINPHNM VFKLPPPRFQ IQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-14221101193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036008.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H76e-97DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLB9HT090.0B9HT09_POPTR; Uncharacterized protein
STRINGPOPTR_0010s20040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-87MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]