PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020387.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 593aa    MW: 67969 Da    PI: 5.1248
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020387.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011304324222
                  EETTTTEEESSHHHHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                   C  Cgk F++  + k+H ++
  CCG020387.1 304 YCVVCGKKFKSEKQWKNHEQS 324
                  5*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.14E-22578IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1106.6E-23676IPR001623DnaJ domain
SMARTSM002714.7E-21769IPR001623DnaJ domain
PROSITE profilePS5007619.292877IPR001623DnaJ domain
CDDcd062574.08E-18866IPR001623DnaJ domain
PfamPF002265.5E-20974IPR001623DnaJ domain
PRINTSPR006251.5E-141028IPR001623DnaJ domain
PRINTSPR006251.5E-142843IPR001623DnaJ domain
PRINTSPR006251.5E-144969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.41E-13295343No hitNo description
SMARTSM004515.9E-6300334IPR003604Zinc finger, U1-type
SMARTSM003550.43303327IPR015880Zinc finger, C2H2-like
PfamPF121713.1E-10303328IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280305327IPR007087Zinc finger, C2H2
SMARTSM003557.5563587IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704563592IPR007087Zinc finger, C2H2
PROSITE patternPS000280565587IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MASNQLRCHY EVLGVSRDSS PEEIRSAFKK LALRRHPDKL LQSGLSQAEA TAQFQELVQA  60
YEVLSDPKER AWYDSHRSQI LFSDPNSGNS VPDSVIPNLF SFFSNTVYSG YTDSGRGFYK  120
VYSDVFDKIY ANEVNFCRKL GLGLDSVREA PLMGSLQSDY AQVSAFYNYW LGFSTVMDFC  180
WVDQYDVMAG PNRKSRRVME EENKKLRKKA RREYNETVRG LGEFVKKRDK RVIDMVVKKN  240
AEMERKKEEE KERKKKLESE KMERLRAYEE PEWARVNEEE VDGMEGFEED EDKGKKGNGG  300
KELYCVVCGK KFKSEKQWKN HEQSKKHKEK VAELRDSFQG EDDEREDIEE DELEKNEDVD  360
EIEEMFKEDF KIQREGNGAE VLYSSDKEDG FFDADDMDGI DEKNGNVEDE EGEEMSVLEA  420
MMSGHRSRKS RGSRHTNEEF PQEVEDAKEA EVMEYNNRKT RRRGKKMRGW NNGGEGVTSD  480
IDESKSANEE TNGCDDEQNK EPASNSFVED ENDGKIDDHL GKTGKSSNQS SKKKGAAKKE  540
ANVKSKKLSK GKKGKAISKD SGNVCDTCGV EFESRNKLHK HLGDTGHATL KSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1457465RKTRRRGKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003861.10.0PREDICTED: dnaJ homolog subfamily C member 21
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A2C9VP090.0A0A2C9VP09_MANES; Uncharacterized protein
STRINGcassava4.1_003940m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-153DNAJ heat shock N-terminal domain-containing protein