PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020380.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 734aa    MW: 80199.4 Da    PI: 8.6553
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020380.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-094284651954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  CCG020380.1 428 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 465
                  554459******************************88 PP
2BELL113.98.6e-37293363272
         BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  rqelq+kk kL+++l+eV++rY+qy++q+q+v+ssFe++ g g+ak+Yt+lAl++iS++Fr+Lkd i++qi
  CCG020380.1 293 RQELQMKKGKLVNMLDEVEQRYRQYHHQMQVVVSSFEQASGFGAAKSYTALALQTISKQFRSLKDTISSQI 363
                  89********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-55220361IPR006563POX domain
PfamPF075261.8E-46225360IPR006563POX domain
PROSITE profilePS5007112.131406469IPR001356Homeobox domain
SMARTSM003892.3E-9409473IPR001356Homeobox domain
CDDcd000861.07E-12409470No hitNo description
SuperFamilySSF466896.42E-17410476IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-29412475IPR009057Homeodomain-like
PfamPF059203.1E-18426465IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MATYFHESSE IQAAAAPSDG IQTLYLMNPN YLSSYSDSTQ QQHQQQHPNM IFFNPSSSTA  60
ASNNGLHTGN LPHGPPQNHH FVGIPLAAPS SNITSLTPDS HSRPSPHGIV PSHVHYNIWG  120
SMDQNSVSTA CESSAANDVV SAQVGFRRPV AVSPGRQGLS LSLSSQQAPT PPTPYNRAIS  180
NKHHEIQALH PYVSVVSSGD EIRVSGNSPS SVSAVSNGVS GLQNMVLGSK YLRATQELLD  240
EAVNVGKDLI KSGLEGSSKE KMKMTKQSIT GDGSSGGEAY AANRGAELTT AHRQELQMKK  300
GKLVNMLDEV EQRYRQYHHQ MQVVVSSFEQ ASGFGAAKSY TALALQTISK QFRSLKDTIS  360
SQIRAASKSL GEEDCIGAKV EGSRLRYVDH QLRQQRALQQ LGMVQHNAWR PQRGLPERAV  420
SVLRAWLFEH FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI NARVRLWKPM VEEMYVEEIK  480
GQEKTGSEET ANKNENKESR SHSSAPGESS TLQMDQLKGV LHSKQVEKPR NQNTSPPRFS  540
YPAISMSPMG APLQQQAGFT LIGPAEMEGI SHRSSKKPSS DMQNSPSSIL SMDMDVKQGE  600
TSREISANFG GERLIKDGYP LITSSGGFGA YPMGDLGRFN LEQMTPRFSG NSVSLTLGLP  660
HCENLSLSGT QQNYLSNQNI NQLAGRRLEI GSGTEPDFSG INTSQNSHSS TGFESIDIQN  720
RKRFPAQLLP DFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16415473563Homeobox protein Meis2
3k2a_B2e-16415473563Homeobox protein Meis2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2323520.0CU232352.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003835.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_011003836.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_011003838.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_011003839.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_011003840.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_011003841.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLA0A2K1Z1900.0A0A2K1Z190_POPTR; Uncharacterized protein
STRINGPOPTR_0009s02250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-119BEL1-like homeodomain 1