PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020298.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19017.1 Da    PI: 10.3336
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020298.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.6e-21344445
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 +++  rqvtfskRr+g++KKA+EL +LC++++a+i+fs+ gk
  CCG020298.1  3 KDSNSRQVTFSKRRTGVFKKANELATLCGVQIAIIVFSPGGK 44
                 78899**********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-21151IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.081152IPR002100Transcription factor, MADS-box
CDDcd001206.17E-23251No hitNo description
SuperFamilySSF554551.83E-21263IPR002100Transcription factor, MADS-box
PfamPF003193.0E-24248IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-101429IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-102950IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MVKDSNSRQV TFSKRRTGVF KKANELATLC GVQIAIIVFS PGGKPFSFGH PNVEFVAQSF  60
LNRDKKPKVS VGSLVDSQQE ARLEKLNSQL NDILGKLHYE RKRGELLEKA VKLKGSEPKL  120
IGELNLDELR KMKGELEELQ EKLRGCVTEM EASSSLLLLS KKPIREKHQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011679.11e-118PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_011016262.11e-118PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLB9H3Z41e-104B9H3Z4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s13600.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-34AGAMOUS-like 29