PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020236.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 331aa    MW: 36512.7 Da    PI: 7.9503
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020236.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
      CCG020236.1 14 RGPWSPEEDAKLKEYIAKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding37.45.8e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
      CCG020236.1  69 GEFSDDEDRIICSLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.916966IPR017930Myb domain
SuperFamilySSF466895.72E-2711109IPR009057Homeodomain-like
SMARTSM007179.0E-131364IPR001005SANT/Myb domain
PfamPF002493.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241569IPR009057Homeodomain-like
CDDcd001671.51E-91662No hitNo description
PROSITE profilePS5129416.93967117IPR017930Myb domain
SMARTSM007173.6E-1167115IPR001005SANT/Myb domain
PfamPF002491.0E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKEYIA KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC SLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGS  120
INPDALRKPQ QAAHFSSLLH NTSLPSSPST PLSSSPSFTC SNNSYNYTLS RSFTEPISFS  180
SSPLSNNSFT TASMVQPQET FVGSMQNYQV KDNLIMFGGE ASCSSSDGSC SNQMSHVKEE  240
YGHGDGANNN TGQVGLQNYL HNGVEDDQKL MVSSGFAGHG VLNGWTGKQI GLWGENPLDY  300
GLEEIKQLIS TSSCSNFLFD ENKTAEKAMY Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006617.10.0PREDICTED: transcription factor RAX2
TrEMBLA0A2K1XDI20.0A0A2K1XDI2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-76myb domain protein 36