PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020139.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 403aa    MW: 44383 Da    PI: 4.4605
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020139.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.16.3e-4871351129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lppGfrFhPtd elv++yLk+kv gkk+++ ++i+e++i+k+ PwdLp k ++++++ +w+fF++++kkya+g rk+rat+ gyWk+tgkd++v   k
  CCG020139.1   7 LPPGFRFHPTDVELVKYYLKRKVLGKKFHF-QAIAEIEINKYAPWDLPnKsCLRTRDLKWFFFCPTEKKYASGVRKKRATDIGYWKTTGKDRSVQY-K 102
                  79***************************9.89**************95347777888*************************************9.8 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                  +e+vg+ ktLvf+ g+apkg +tdWvm eyrle
  CCG020139.1 103 NEVVGMIKTLVFHIGKAPKGDRTDWVMYEYRLE 135
                  999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-565157IPR003441NAC domain
PROSITE profilePS5100552.4197157IPR003441NAC domain
PfamPF023652.5E-258134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGRNSSLPPG FRFHPTDVEL VKYYLKRKVL GKKFHFQAIA EIEINKYAPW DLPNKSCLRT  60
RDLKWFFFCP TEKKYASGVR KKRATDIGYW KTTGKDRSVQ YKNEVVGMIK TLVFHIGKAP  120
KGDRTDWVMY EYRLEEKELT DKGIAQDEYV LCVIFKKDGP GPKNGAQYGA PFDEDEWDDG  180
DDEVEKEVNA QPAILPALMD APAFMLPNNP NMSIATSSCV PESTCTGPLI SCPSRAPSTA  240
CTTLPRVSND DVASTEALQV VHGGVNGGEA DSSDMPAFQQ PCNPNSFILA SSSSYVPENT  300
CSAYIPSVGA TQVEAPQIVD ENDDILSLLA MFDNDNTKSV DFGGIAEPET DIFQNLGDLA  360
TPEGGGDGIP ISQYFMDPML PGGNADFLEL MDLDTPLHRS WGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-45616316171NO APICAL MERISTEM PROTEIN
1ut4_B2e-45616316171NO APICAL MERISTEM PROTEIN
1ut7_A2e-45616316171NO APICAL MERISTEM PROTEIN
1ut7_B2e-45616316171NO APICAL MERISTEM PROTEIN
3swm_A3e-45616319174NAC domain-containing protein 19
3swm_B3e-45616319174NAC domain-containing protein 19
3swm_C3e-45616319174NAC domain-containing protein 19
3swm_D3e-45616319174NAC domain-containing protein 19
3swp_A3e-45616319174NAC domain-containing protein 19
3swp_B3e-45616319174NAC domain-containing protein 19
3swp_C3e-45616319174NAC domain-containing protein 19
3swp_D3e-45616319174NAC domain-containing protein 19
4dul_A2e-45616316171NAC domain-containing protein 19
4dul_B2e-45616316171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022982.10.0PREDICTED: NAC domain-containing protein 72-like
SwissprotQ9FY822e-87NAC82_ARATH; NAC domain-containing protein 82
TrEMBLB9HEK00.0B9HEK0_POPTR; NAC family protein
STRINGPOPTR_0007s03840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.17e-86NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]