PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020038.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 314aa    MW: 34947.2 Da    PI: 7.1887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020038.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12101152155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h  +Er+RR+++N+ ++ +r++lP++   + ++ + a+i+  A++++k+L+
  CCG020038.1 101 QRMTHINVERNRRKQMNEYLAVIRSMLPPS---YVQRADQASIVGGAINFVKELE 152
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.589100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-15100164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-12100156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.07E-12100156No hitNo description
PfamPF000107.8E-10101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-9106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MALETVVFQQ DPYSTLGLGA TWIHGFDLEG EKANYHETLD TTISIESDFH SNSNWNINNS  60
SSQEINCACN GGLLNGGNAA GGRRKRRRRR SIKDEAEVAH QRMTHINVER NRRKQMNEYL  120
AVIRSMLPPS YVQRADQASI VGGAINFVKE LEKLLQSLEA HKQIKKVISA TGSDFSSPFS  180
DFFTFPQYST ASSRNKHSNN NSSSSTESIF ADQKRSIAIA DVEVTMTESH ANLKIQSRKH  240
PKQLLKMVTG LHSLGLHILH LNVTTVDQMA LYSFSVKVED ECKLTSVDEI AAAVHEMVGR  300
IQEDATSNCM SSVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18289RRKRRRRR
28387RKRRR
38389RKRRRRR
48390RKRRRRRS
58489KRRRRR
6101112RMTHINVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164471e-142AC216447.1 Populus trichocarpa clone ACSB1045-A16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022837.10.0PREDICTED: transcription factor bHLH96-like isoform X1
TrEMBLB9H4P91e-163B9H4P9_POPTR; Uncharacterized protein
STRINGPOPTR_0007s04950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-53bHLH family protein