PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020011.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 358aa    MW: 39702.9 Da    PI: 6.4409
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020011.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.92.2e-07134155223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   C++Cgk F+r  nL+ H+r H
  CCG020011.1 134 FCEICGKGFKRDANLRMHMRAH 155
                  6*******************99 PP
2zf-C2H211.40.00097254270521
                  TTTEEESSHHHHHHHHH CS
      zf-C2H2   5 dCgksFsrksnLkrHir 21 
                   Cg+sFsrk+ L  H+ 
  CCG020011.1 254 SCGTSFSRKDKLFGHMT 270
                  5**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.69E-6130156No hitNo description
SMARTSM003550.0015133155IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.9E-6133155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.967133160IPR007087Zinc finger, C2H2
PfamPF128740.0019134153No hitNo description
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
SMARTSM0035541185218IPR015880Zinc finger, C2H2-like
SMARTSM0035513223245IPR015880Zinc finger, C2H2-like
SMARTSM00355220251275IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSNPGESTRN PTGFSVPIRN TDPRVPLLNL STVRTRMDSL QQFLSESVNN NTLIGKDQMD  60
MVSSEISSAI HEIIVNAAAL LSCNSSSSQP LTPQPPVDCT AIKKAQVLKV ENKEEDSEVV  120
ELDAVELLAE HVHFCEICGK GFKRDANLRM HMRAHGNQFK TLEALAKPDK GNETISASFA  180
GKTKFSCPFE GCNRNKKHSK FKPLKSVICV RNHFKRSHCP KMYSCNRCNK KSFSVVTDLK  240
SHLKHCGESR WKCSCGTSFS RKDKLFGHMT LFEGHMPAVV GEEEDRKAKE VGVGGAVDVE  300
EDEEEESVVK GDNLGGDCND NEFFEGLLDG FCSMEGYNLQ DVLGSPFSEI EEFCGLRH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022804.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLB9HFF70.0B9HFF7_POPTR; Uncharacterized protein
STRINGPOPTR_0007s05340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.33e-74C2H2 family protein