PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019911.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 788aa MW: 90452.4 Da PI: 8.5225

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019911.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.1	7.7e-20	72	145	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y+ YA++vGF++r+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw+v++++++HnHel CCG019911.1 72 LYSVYATRVGFRTRTGQLYRSRTDGSVASRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDSGKWVVDQIHKDHNHEL 145 7************************************876..............589**************************9 PP
2	FAR1	68.6	1.5e-21	226	301	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY +YA e+GF++r+ + +sk++g+it+r+fvCskeg++++ +r+gC a +++k++++g+w+v++l+++HnH+l p CCG019911.1 226 FYLRYADEAGFKTRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRIGCGAFMRIKRQDSGTWMVDRLQKDHNHDLEP 301 9************************************999..............489**************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.4E-16	72	145	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	3.7E-17	226	301	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.7E-27	400	492	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.472	674	710	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-7	684	709	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.0E-7	685	712	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 788 aa Download sequence Send to blast
MVFDSIPSLF NNTRSSSSDP YSEEYGNAVI VRAHPLGMAR ANNNVNVEGA RGSELEPCIG 60 LEFDSADDAR ELYSVYATRV GFRTRTGQLY RSRTDGSVAS RRFVCSKEGF QLNSRTGCPA 120 FIRVQRRDSG KWVVDQIHKD HNHELGDMEE SRPPILPQRT PKGRKSSAKV SSKSKLKFLA 180 EVDDGQPCFS RSISFKRIKT GGDGGQPKAE PYAGLVFSSV DEAFHFYLRY ADEAGFKTRI 240 GQLFRSKNDG SITSRRFVCS KEGFQHPSRI GCGAFMRIKR QDSGTWMVDR LQKDHNHDLE 300 PQTRTHTKTS TASKKFIDEV NGGLDTLDLS EINNGVRSNI RQGNNIGSEW YHLLLDYFQS 360 KQAKDTGFFY SVQVDNGVCM SVFWADGRSR FASSQFGDAI VVDTSYRKTN YLVPFAMFVG 420 VNHHKQPVLL GCALIANESK ESFIWLFQTW LRATSGCRPK SIIADLDMAI QQAIAHVFPG 480 TRHRFSMWQI RAKERENLRS MSSEFKYEYE KCIYDSQTNA DFNTMWNALV NKYGLKENAW 540 LKEMYEKRES WVPLYLRGTF FAGIPLNESM ESLFGIFLNA ETPLVEFIAR YEQGLEQRRE 600 EERKEDFNCS NLQAFLQTKE PIEEQCRRLY TLTVFQIFQK ELLQCYNYLG IKIYEEGTIS 660 RYSVRRCGND SEKHMVTFSA SNLNVSCSCQ MFEFEGVLCR HVLRVFILLN MREIPSHYLL 720 HRWTRNAEHG LVCDVDSGVS CQELKSLMVW SLRETACKYI ESGTTSIEKY RLACEIMRDG 780 AKKFSRQR

Sequence ? help Back to Top

Protein Sequence Length: 788 aa Download sequence Send to blast

MVFDSIPSLF NNTRSSSSDP YSEEYGNAVI VRAHPLGMAR ANNNVNVEGA RGSELEPCIG  60
LEFDSADDAR ELYSVYATRV GFRTRTGQLY RSRTDGSVAS RRFVCSKEGF QLNSRTGCPA  120
FIRVQRRDSG KWVVDQIHKD HNHELGDMEE SRPPILPQRT PKGRKSSAKV SSKSKLKFLA  180
EVDDGQPCFS RSISFKRIKT GGDGGQPKAE PYAGLVFSSV DEAFHFYLRY ADEAGFKTRI  240
GQLFRSKNDG SITSRRFVCS KEGFQHPSRI GCGAFMRIKR QDSGTWMVDR LQKDHNHDLE  300
PQTRTHTKTS TASKKFIDEV NGGLDTLDLS EINNGVRSNI RQGNNIGSEW YHLLLDYFQS  360
KQAKDTGFFY SVQVDNGVCM SVFWADGRSR FASSQFGDAI VVDTSYRKTN YLVPFAMFVG  420
VNHHKQPVLL GCALIANESK ESFIWLFQTW LRATSGCRPK SIIADLDMAI QQAIAHVFPG  480
TRHRFSMWQI RAKERENLRS MSSEFKYEYE KCIYDSQTNA DFNTMWNALV NKYGLKENAW  540
LKEMYEKRES WVPLYLRGTF FAGIPLNESM ESLFGIFLNA ETPLVEFIAR YEQGLEQRRE  600
EERKEDFNCS NLQAFLQTKE PIEEQCRRLY TLTVFQIFQK ELLQCYNYLG IKIYEEGTIS  660
RYSVRRCGND SEKHMVTFSA SNLNVSCSCQ MFEFEGVLCR HVLRVFILLN MREIPSHYLL  720
HRWTRNAEHG LVCDVDSGVS CQELKSLMVW SLRETACKYI ESGTTSIEKY RLACEIMRDG  780
AKKFSRQR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006594.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	U5G0Z9	0.0	U5G0Z9_POPTR; Uncharacterized protein
STRING	POPTR_0010s03000.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]