PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019840.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 418aa MW: 46783.7 Da PI: 9.1473

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019840.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	3e-09	185	232	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + +k Ka +L + ++Y++sLq CCG019840.1 185 SHSLAERVRREKISERMKILQLLVPGC----DKITGKALVLDEIINYVQSLQ 232 8***********************9....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.72E-16	179	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.33E-10	179	236	No hit	No description
PROSITE profile	PS50888	15.25	181	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-15	181	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-6	185	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.7E-9	187	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MAAFPYQHQP LFLDSAFLPS IATPTKNMNN NMYGSFEEAG NMINTNGFSQ IYYPETFHET 60 PSRDVRFHQR SHPDDHSYKV SLSDNETSWT KKQSTNPSTA VDKLVTGEHV TQEVTPMARK 120 RASANGFLNS AQSKDARKVK SKRQNKCSGD MKHEEKKPKV EKKVLGEPPA GYIHVRARRG 180 QATDSHSLAE RVRREKISER MKILQLLVPG CDKITGKALV LDEIINYVQS LQNQVEVLSM 240 KLASVNPPLY DFGMDRDAFM VRPESLSSMS PPLPSLRRNS PIQPTAFADT ASATTATFAT 300 EENNYPLIDN SATLFLQGMK PSDFTTHQAQ AGVHALQFPN FKGQEDIDTA DFYADCHSCF 360 DYKNRISFLF GLSPFYTRKE ADTDFGAPGK QPNKKIPAPH LPSQLNKIHY TGNPGTKT

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MAAFPYQHQP LFLDSAFLPS IATPTKNMNN NMYGSFEEAG NMINTNGFSQ IYYPETFHET  60
PSRDVRFHQR SHPDDHSYKV SLSDNETSWT KKQSTNPSTA VDKLVTGEHV TQEVTPMARK  120
RASANGFLNS AQSKDARKVK SKRQNKCSGD MKHEEKKPKV EKKVLGEPPA GYIHVRARRG  180
QATDSHSLAE RVRREKISER MKILQLLVPG CDKITGKALV LDEIINYVQS LQNQVEVLSM  240
KLASVNPPLY DFGMDRDAFM VRPESLSSMS PPLPSLRRNS PIQPTAFADT ASATTATFAT  300
EENNYPLIDN SATLFLQGMK PSDFTTHQAQ AGVHALQFPN FKGQEDIDTA DFYADCHSCF  360
DYKNRISFLF GLSPFYTRKE ADTDFGAPGK QPNKKIPAPH LPSQLNKIHY TGNPGTKT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011002106.1	0.0	PREDICTED: transcription factor bHLH137-like isoform X3
TrEMBL	B9IFJ2	0.0	B9IFJ2_POPTR; Uncharacterized protein
STRING	POPTR_0015s11550.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4182	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-46	bHLH family protein