![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG019770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 27802 Da PI: 5.7176 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.9 | 4.9e-05 | 159 | 196 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+++ ++++ L+el+ + +K + a++L +A+ YI+ Lq CCG019770.1 159 REKLGDRIAALQELVSPF-----GKTDTASVLHEAMGYIRFLQ 196 89999***********98.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.07E-5 | 141 | 200 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-8 | 143 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-12 | 144 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.22 | 146 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.9E-6 | 152 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MAGRESFFEG NHLVPEGNPP SFSELLFSTE DDFVGVDVAH AFHFSSVEKS PTMLCFGGYN 60 YRNDSEIVMF SEETKTTPQP QISGVTCSDS SSASSCSNNC NSVNVISTIS TSNRKRNGSS 120 QEVPMKCTNT VAKTPFLSQR NSKRTETKNP GSANAKVKRE KLGDRIAALQ ELVSPFGKTD 180 TASVLHEAMG YIRFLQDQVK VLCTPYLQSL PEGGENGGEE SIKNLRSRGL CLVSVDCTLP 240 VANSNGADFW SPATMGN |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC209038 | 1e-164 | AC209038.1 Populus trichocarpa clone POP007-J20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011030389.1 | 0.0 | PREDICTED: transcription factor bHLH113 isoform X2 | ||||
TrEMBL | A0A2K2C5X3 | 1e-162 | A0A2K2C5X3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s30670.1 | 1e-138 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10321 | 21 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19500.1 | 4e-45 | bHLH family protein |