PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019742.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 206aa    MW: 22288.3 Da    PI: 6.7415
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019742.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.42.2e-282102196
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C++dCvl++ +     p++q++++ +v+k+FG++ ++++++++p+++r+ +++sl++eA  ra +Pv+Gavg++++++++l+q+++ 
  CCG019742.1   2 SCSGCRVLRKGCSEDCVLRQGIgwinnPQAQANATVFVAKFFGRAGLMSFMSSVPQSQRPSLFQSLLFEAVGRAVNPVSGAVGLLWTGNWHLCQKAVM 99 
                  6*********************************************************************************************9987 PP

       DUF260  94 lal 96 
                  ++l
  CCG019742.1 100 AVL 102
                  665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.4371107IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-24298IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSCSGCRVLR KGCSEDCVLR QGIGWINNPQ AQANATVFVA KFFGRAGLMS FMSSVPQSQR  60
PSLFQSLLFE AVGRAVNPVS GAVGLLWTGN WHLCQKAVMA VLRRGTVEPL PELEGGVLGP  120
EFDSVSESGG FRPPIDHIGS GSQKLKRKMN DDGAKYGQTT DLDLCLMYQG SQSPSEESET  180
TTLESSLGDN CRFHEGGEPK LLRLFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030357.11e-151PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE81e-58LBD39_ARATH; LOB domain-containing protein 39
TrEMBLB9GI821e-134B9GI82_POPTR; Uncharacterized protein
STRINGPOPTR_0001s30280.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.15e-59LOB domain-containing protein 38