PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019730.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 366aa    MW: 39781.9 Da    PI: 4.7198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019730.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.3e-102903301055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  CCG019730.1 290 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 330
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-14281347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12285341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-11289334No hitNo description
PfamPF000101.2E-7290330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEPIGATAEG EWSSLSGMYT SEEADFMEQL LVNCPPNQVA SSSSFGVQSS FWPNHEPTMN  60
MEGANECLLY SLGIADTNLY PFSQVSSGYS GGGSILFPNS SGESYYLIDS HPVLADTNSS  120
MSMDFCMGDS YVVDGDDFSN QELSNGNVEE SGGNQTVAAL PEPESSLQPK RESKMPASEL  180
PLEDKSRKPP ENSKKRSRRT GDAQKNKRNV RSKKSQKVAS TSNNDEESNG GLNGPVSSGC  240
CSEDESNASQ ELNGGASSSL SSKGTTTLNS RGKTRASKGA ATDPQSLYAR KRRERINERL  300
RILQNLVPNG TKVDISTMLE EAVQYVKFLQ LQIKLLSSED LWMYAPIAYN GMDIGLDHLK  360
LTTPRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030345.10.0PREDICTED: transcription factor bHLH85-like
TrEMBLA0A3N7FV150.0A0A3N7FV15_POPTR; Uncharacterized protein
STRINGPOPTR_0001s30150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.17e-51ROOT HAIR DEFECTIVE 6-LIKE 2