PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019679.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 315aa    MW: 34969.9 Da    PI: 8.9034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019679.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52e-12152199355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  CCG019679.1 152 QDHIIAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYLKQLQ 199
                  6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.91149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-10152199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-17153211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-17153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-12154203No hitNo description
SMARTSM003531.2E-14155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
METSSITALC ELGMEDSSFT NQWFMNSLDD TGLLPFAAAF GENMHHSFSH QNFNLKTSMD  60
SARPTKQLRT DHLSNPQPAF SPNILSFVNS NHANQMGLMK PKEEAVCSKS INNLPSDMVV  120
SQDSFGNQNY AFKASQGPKM ISANGTRLSQ SQDHIIAERK RREKLSQRFI ALSAVVPGLK  180
KMDKASVLGD AIKYLKQLQE RVKTLEEQTK RKTMESVVIV KKSRVYVDEG GENSSSDVSK  240
GPIHETLPEL EARFCDKHVL IRIHCKKNKG VLEKTVAEVE KLHLSVINSS VLTFGTSVLD  300
VTIIAQASSV LNHSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14153202857Transcription factor MYC2
5gnj_B2e-14153202857Transcription factor MYC2
5gnj_E2e-14153202857Transcription factor MYC2
5gnj_F2e-14153202857Transcription factor MYC2
5gnj_G2e-14153202857Transcription factor MYC2
5gnj_I2e-14153202857Transcription factor MYC2
5gnj_M2e-14153202857Transcription factor MYC2
5gnj_N2e-14153202857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERKRRE
2158163RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030254.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_011030255.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_011030256.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A2K2C5920.0A0A2K2C592_POPTR; Uncharacterized protein
STRINGPOPTR_0001s29400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-62bHLH family protein