PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019618.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 306aa    MW: 33545.4 Da    PI: 4.7237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019618.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.41.9e-062122481555
                  HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  ri ++   Lr+++P+       +K++ a++Le+A++YI +Lq
  CCG019618.1 212 RIAERVKCLRKVMPWiT-----TKMDTATVLEEACRYIMNLQ 248
                  67777788*******55.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.851197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0082206253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-8210257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.37E-5211251No hitNo description
Gene3DG3DSA:4.10.280.101.5E-7212256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDIEDFDSDF VFNGDPAIQL FPLISGHDHA DRASTFNSSV FSDVGTPATA TPMFNSVFSD  60
AGMLAPSLLS YYYSSNDLLT SMPPPLSTTT SNFTNLLHED GDNYYYYTPP ASEQLGLGNS  120
FVVAPQLSSP HDSAQPYDFF SSIPSQPVES TQPHDLFSSV NDSQTLESVL GKFNAVTKKP  180
KRLGQMKKPK RSAFDYGTGS TSSSASVLAK QRIAERVKCL RKVMPWITTK MDTATVLEEA  240
CRYIMNLQEQ IIALVQSRPA TSFDHYNNFV HGANDGGGGY GEGVVSREQI MEMVLKANVD  300
QNFVGF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006414.10.0PREDICTED: transcription factor HEC3-like
TrEMBLA0A2K1X3040.0A0A2K1X304_POPTR; Uncharacterized protein
STRINGPOPTR_0017s06860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2822433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-07bHLH family protein