PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019593.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 513aa    MW: 56902.4 Da    PI: 6.9297
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019593.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.84e-163380148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +l+++vk++G g+W+++ +  g+ R++k+c++rw ++l
      CCG019593.1 33 KGPWTVAEDAILIEYVKKHGEGNWNSVQKNCGLMRCGKSCRLRWANHL 80
                     79******************************************9986 PP
2Myb_DNA-binding54.72.4e-1786129146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE+++++++++++G++ W++ a+ ++ gRt++++k++w++
      CCG019593.1  86 KGSFTPEEEKIIIELHAKHGNK-WARMASQLP-GRTDNEIKNYWNT 129
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5282880IPR017930Myb domain
SuperFamilySSF466896.74E-3130127IPR009057Homeodomain-like
SMARTSM007172.8E-133282IPR001005SANT/Myb domain
PfamPF002495.7E-153380IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-243487IPR009057Homeodomain-like
CDDcd001672.44E-113580No hitNo description
PROSITE profilePS5129425.72981135IPR017930Myb domain
SMARTSM007172.2E-1785133IPR001005SANT/Myb domain
PfamPF002492.1E-1686129IPR001005SANT/Myb domain
CDDcd001676.78E-1388129No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2688133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MMSNRNCNNI DRVVVMESGQ PTAPEGDNQG LKKGPWTVAE DAILIEYVKK HGEGNWNSVQ  60
KNCGLMRCGK SCRLRWANHL RPNLKKGSFT PEEEKIIIEL HAKHGNKWAR MASQLPGRTD  120
NEIKNYWNTR MKRHQKAGLP IYPQDFQAKT AAFRFHHQED RRTQPNSTSL SSSPYILCFP  180
PLDPNNSFAT PLNPSQSHLS PLAFHSNPSH QLKLFANTNS NDVCLPLSLP PVSPYQQSPL  240
STNPLSQNPT RQAVAINTPP SVLFYNDVDM ETNMSFTSLI MGGQVQPIGF IPSGQTPPGP  300
TTSWGGGACF EEASNKSNNN GYGNSETSQQ GMAGNMNNSG LLDALLQEAK TIRFKGKSNS  360
DDLLPACNEG KRAMDSTVKE EATNRVELLP RNGSEYSCGE KLWDDLSSSQ SSNIWTKPSE  420
EAAGQELNSM DDDLISLLNH FPSSEPLPEW YRQSRNERNS NRMPYSGLNI VDDNRDPDVK  480
EDASLTRASN TEGVPNRGRA LVSCHWNNMP GIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29311335106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006466.10.0PREDICTED: uncharacterized protein LOC105112461
TrEMBLA0A2K2BMY50.0A0A2K2BMY5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s21300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.16e-72myb domain protein 101