PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019557.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 334aa MW: 36617.9 Da PI: 6.2603

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019557.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.1e-09	244	287	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L++l+P+ K++ +++LekA+ Y+k Lq CCG019557.1 244 IAAKNRRERISERLKVLQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 287 6779*****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.25	237	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-13	238	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.9E-12	239	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.02E-11	243	291	No hit	No description
SMART	SM00353	6.1E-12	243	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.7E-7	244	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MALAKDRMGS VQTCPYNGNV MGDFSSVGSY GFDEYQKVAF HEEGNSTSEK TSGLMIKNLA 60 MTSSPSSLGS PSSAISGELV FQATDHQVEE AHSLISFKGI GFDNIMHNNG SLLSFEQSNR 120 VSQTSSQKDD YSAWEGNLSY NYQWNEMNPK CNTSPRLMED FNCFQRAGSF ISMTEKENHG 180 DWLYAESTIV ADSIQDSATA DASSFHKRPN MGESMQALKK QCNNATKKPK PKSAAGPAKD 240 LQSIAAKNRR ERISERLKVL QDLVPNGSKV DLVTMLEKAI SYVKFLQLQV KVLATDEFWP 300 VQGGKAPDIS QVKEAIDALL SSQTKDGNSS SSPK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006444.1	0.0	PREDICTED: putative transcription factor bHLH086
Swissprot	Q9FJ00	1e-67	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A2K2ARY4	0.0	A0A2K2ARY4_POPTR; Uncharacterized protein
STRING	POPTR_0004s08770.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4937	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	3e-66	RHD SIX-LIKE 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]