PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019360.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 163aa MW: 18129.3 Da PI: 6.9558

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019360.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.3	1.8e-10	46	86	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++l+P +K++ +++Le+A++Y+k L CCG019360.1 46 ARERRHRISDRFKILQSLVPGG-----TKMDTVSMLEEAINYVKFL 86 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.745	37	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-14	42	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.85E-14	43	90	No hit	No description
SMART	SM00353	3.8E-13	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-12	43	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.4E-8	46	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MDYYSTTNPT SSGSSSAPKN GKEKNKSGRK SSGGVKLSTD PQSVAARERR HRISDRFKIL 60 QSLVPGGTKM DTVSMLEEAI NYVKFLKTQV LLHQTIMNFV DDERSLDHYL PADYSTALPT 120 EQPAYLDGNF APVVHPSISV LPCPDSYLLG ENYMQYDAFD TKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006374002.1	1e-101	transcription factor LAX PANICLE 1
Swissprot	Q9M041	4e-29	BH140_ARATH; Transcription factor bHLH140
TrEMBL	B9NI62	1e-100	B9NI62_POPTR; Uncharacterized protein
STRING	POPTR_0016s12830.1	1e-101	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7167	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	5e-31	APRATAXIN-like

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]