PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 830aa MW: 95533 Da PI: 8.0969

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019286.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.9	5.3e-21	114	188	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn YA++vGF++r+ + ++s+ +g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw++++++++HnHel CCG019286.1 114 EFYNVYATRVGFRTRTGQLYRSRSDGSVSSRRFVCSKEGFQLS--------------SRTGCPAFIRVQRRDSGKWVIDQMHKDHNHEL 188 6*************************************876..............589**************************9 PP
2	FAR1	69.6	7.7e-22	267	343	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY +YA e+GF++r+ + +sk+ng+it+r+fvCskeg++++ +r+gC a +++k++++g+w+v++l+++HnH+l p CCG019286.1 267 NFYVRYADEAGFKTRIGQLFRSKNNGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRQESGTWMVDRLQKDHNHDLEP 343 6*************************************999..............4899*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-17	114	188	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.8E-17	267	343	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.0E-29	441	534	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.41	716	752	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.6E-8	726	751	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.1E-8	727	754	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence Send to blast
MEKRQHRRPP PPPPTLPFEI HTLDLEPDPP EHTQQMYKKG KKDVVFDSIP SFFNNIKSSN 60 STPYSEEYGN AVIVRAYPLG MALANRNFNV EDGRESGVEP RKGLEFDSAD DAREFYNVYA 120 TRVGFRTRTG QLYRSRSDGS VSSRRFVCSK EGFQLSSRTG CPAFIRVQRR DSGKWVIDQM 180 HKDHNHELGD VEESHPPVLQ QKASMGRKSS VEVSSRKKLK LLAEVDDGQP CSSGSISVKR 240 VRTGADGQPI AEPYAGLVFT SADEAYNFYV RYADEAGFKT RIGQLFRSKN NGSITSRRFV 300 CSKEGFQHPS RVGCGAFMRI KRQESGTWMV DRLQKDHNHD LEPHTGTHKK SSTASKKFTD 360 EVNGGLDSLD LLEINNGVHL NSSQGNNIGS EWYRLLLDYF QSRQAEDTGF FYSVEVDNGV 420 CMSIFWADGR SRFACSQFGD VIVVDTSYRK TNYLVPFAMF VGVNHHKQPV LLGCALIANE 480 SKESFIWLFR TWLRAMSGCR PKSIIADQDM AIQQAIAHVF PGTRHRFSMW QIREKERENL 540 RSMSTEFKYE YEKCIYESQT NAEFNTMWNA LVNKYGLKEN AWLKEMYEKR ESWVPLYLRG 600 TFFAGIPVNE SMESFFGTFL NAETPFGDFI ARYEQGLEQR REEERKEDFN SSNLQAFLLT 660 KEPIEEQCRR LYTLHVFQIF QKELLQCNNY LGIKSYEEGT ISRYSVRRCG NDSEKHMVTF 720 SASNLNVSCS CQMFEFEGVL CRHVLRVFIM LDIREIPSCY LLHRWTRNAE HGIVCDVDPG 780 VSFQELKALM VWSLRETACK YIESGTTSLE KYRLACEIMR EGAKKICRHR

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence Send to blast

MEKRQHRRPP PPPPTLPFEI HTLDLEPDPP EHTQQMYKKG KKDVVFDSIP SFFNNIKSSN  60
STPYSEEYGN AVIVRAYPLG MALANRNFNV EDGRESGVEP RKGLEFDSAD DAREFYNVYA  120
TRVGFRTRTG QLYRSRSDGS VSSRRFVCSK EGFQLSSRTG CPAFIRVQRR DSGKWVIDQM  180
HKDHNHELGD VEESHPPVLQ QKASMGRKSS VEVSSRKKLK LLAEVDDGQP CSSGSISVKR  240
VRTGADGQPI AEPYAGLVFT SADEAYNFYV RYADEAGFKT RIGQLFRSKN NGSITSRRFV  300
CSKEGFQHPS RVGCGAFMRI KRQESGTWMV DRLQKDHNHD LEPHTGTHKK SSTASKKFTD  360
EVNGGLDSLD LLEINNGVHL NSSQGNNIGS EWYRLLLDYF QSRQAEDTGF FYSVEVDNGV  420
CMSIFWADGR SRFACSQFGD VIVVDTSYRK TNYLVPFAMF VGVNHHKQPV LLGCALIANE  480
SKESFIWLFR TWLRAMSGCR PKSIIADQDM AIQQAIAHVF PGTRHRFSMW QIREKERENL  540
RSMSTEFKYE YEKCIYESQT NAEFNTMWNA LVNKYGLKEN AWLKEMYEKR ESWVPLYLRG  600
TFFAGIPVNE SMESFFGTFL NAETPFGDFI ARYEQGLEQR REEERKEDFN SSNLQAFLLT  660
KEPIEEQCRR LYTLHVFQIF QKELLQCNNY LGIKSYEEGT ISRYSVRRCG NDSEKHMVTF  720
SASNLNVSCS CQMFEFEGVL CRHVLRVFIM LDIREIPSCY LLHRWTRNAE HGIVCDVDPG  780
VSFQELKALM VWSLRETACK YIESGTTSLE KYRLACEIMR EGAKKICRHR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006068.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	B9HMA5	0.0	B9HMA5_POPTR; Uncharacterized protein
STRING	POPTR_0008s20380.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]