PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019283.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 171aa    MW: 19329.5 Da    PI: 4.2999
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019283.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.82e-27131361128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgk.dkevlsk 95 
                  lp+G+rF+P++++l+v+yL++k+ g++l++ +vi+++d+y + P +Lp   +k+ e +ew+fFs+r+k        + a + gy +   +   +++  
  CCG019283.1  13 LPAGYRFSPNNDDLIVYYLRRKILGQQLPA-DVIPTTDVYASRPDKLPlDDFKGgEANEWFFFSNRSKDDG-----TIALDGGYYEIDPEgAGPITW- 103
                  799***************************.99***************7566662556*******999765.....467889**9955442688888. PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +g+ vg  ktL fy+g++p+g++t+W+++e+r+
  CCG019283.1 104 EGKIVGYVKTLNFYQGSSPNGTETEWMVEEFRV 136
                  999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-327163IPR003441NAC domain
PROSITE profilePS5100532.05613165IPR003441NAC domain
PfamPF023655.7E-1614136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MASAGQTLNR PTLPAGYRFS PNNDDLIVYY LRRKILGQQL PADVIPTTDV YASRPDKLPL  60
DDFKGGEANE WFFFSNRSKD DGTIALDGGY YEIDPEGAGP ITWEGKIVGY VKTLNFYQGS  120
SPNGTETEWM VEEFRVNPEF VPLNNNDRST QEKIENLVAC KISRVQPEPE W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-201313615140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091841e-134AC209184.1 Populus trichocarpa clone POP031-J16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016104.11e-124PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A3N7FW081e-115A0A3N7FW08_POPTR; Uncharacterized protein
STRINGPOPTR_0012s03130.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14452718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.15e-25NAC domain containing protein 86