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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG019243.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 81aa MW: 9200.45 Da PI: 7.3447 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.4 | 2.7e-10 | 1 | 49 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 +p G+rF P+d+ lv +yL k+ ++++l++ +++e+++y eP+++ k CCG019243.1 1 MPTGCRFAPSDDVLVIHYLSKEGKNEPLPCLYAVRECNLYGREPEEIWK 49 699***************************999************9964 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-8 | 1 | 51 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 10.018 | 1 | 81 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-4 | 2 | 50 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MPTGCRFAPS DDVLVIHYLS KEGKNEPLPC LYAVRECNLY GREPEEIWKE FGGDRLKRKI 60 DQDLGLSSFT RLKKSGTDHG S |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC184074 | 1e-108 | AC184074.2 Populus trichocarpa clone Pop1-51H15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464534.1 | 2e-46 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A3N7FCU8 | 4e-45 | A0A3N7FCU8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s22770.1 | 1e-45 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-07 | NAC domain containing protein 25 |