PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019154.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 502aa MW: 54502.9 Da PI: 9.508

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019154.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.7	1.9e-11	361	409	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 +r+rr++kNRe+A rsR K+a ++eLe +v++L++ N+aL+ + e+ CCG019154.1 361 RRQRRMIKNRESAARSRTLKQAHTQELEAEVAKLKELNEALQRKQAEII 409 79***************************************97766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-7	357	423	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.231	359	408	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.6E-12	361	408	No hit	No description
CDD	cd14707	3.77E-23	361	408	No hit	No description
Pfam	PF00170	1.6E-9	361	411	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.27E-8	361	409	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MDSQWDYKNF GNAPPGQSNV TKPQGNPSLI RQSSVYSLTF DEFQNTWGGG LRKDFGSMNM 60 EELLKNIWTA EETQAMTNTL GVGSGGSAPG GNLQRQGSLT LPRTLSQKTV DELWRDLIKE 120 TSGGAEDGSG SAGSNLPQRQ PTLGETTLEE FLVRAGVVRE DSQQIGRPNN SGFFGELSLL 180 NNNNNNNNND SSLAIGFQQP NGNNGLMGTR RMENNGNSVA NQPPSLTLDA GGIRPTQQLP 240 QSLQLSQQQQ QLLFLKPAAT VAFASPLHLS NNAQLASPGV RRSVVGIGDR SVNNGLAHSG 300 GMGIVSLATG GFTIATGSSA NRVSPDVIAK SNADTSSLSP VPYVFSRGRK AGTALEKVAE 360 RRQRRMIKNR ESAARSRTLK QAHTQELEAE VAKLKELNEA LQRKQAEIIE MQQNQFFETK 420 KAQWGDELHG LALGRNIIKN SHVAGKQGVI NGSHNLIPEY KEPLYDAKEL RSIAPTDHKQ 480 PLIFDQLLPE LLMEVNLMNS RN

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MDSQWDYKNF GNAPPGQSNV TKPQGNPSLI RQSSVYSLTF DEFQNTWGGG LRKDFGSMNM  60
EELLKNIWTA EETQAMTNTL GVGSGGSAPG GNLQRQGSLT LPRTLSQKTV DELWRDLIKE  120
TSGGAEDGSG SAGSNLPQRQ PTLGETTLEE FLVRAGVVRE DSQQIGRPNN SGFFGELSLL  180
NNNNNNNNND SSLAIGFQQP NGNNGLMGTR RMENNGNSVA NQPPSLTLDA GGIRPTQQLP  240
QSLQLSQQQQ QLLFLKPAAT VAFASPLHLS NNAQLASPGV RRSVVGIGDR SVNNGLAHSG  300
GMGIVSLATG GFTIATGSSA NRVSPDVIAK SNADTSSLSP VPYVFSRGRK AGTALEKVAE  360
RRQRRMIKNR ESAARSRTLK QAHTQELEAE VAKLKELNEA LQRKQAEIIE MQQNQFFETK  420
KAQWGDELHG LALGRNIIKN SHVAGKQGVI NGSHNLIPEY KEPLYDAKEL RSIAPTDHKQ  480
PLIFDQLLPE LLMEVNLMNS RN

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:16284313}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF405964	0.0	EF405964.1 Populus trichocarpa abscisic acid responsive elements-binding protein 2 (ABF2-1) mRNA, complete cds.
GenBank	EF405965	0.0	EF405965.1 Populus trichocarpa abscisic acid responsive elements-binding protein 2 (ABF2-2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011005982.1	0.0	PREDICTED: bZIP transcription factor TRAB1-like
Refseq	XP_011005983.1	0.0	PREDICTED: bZIP transcription factor TRAB1-like
Refseq	XP_011005984.1	0.0	PREDICTED: bZIP transcription factor TRAB1-like
Swissprot	Q9M7Q3	3e-96	AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6
TrEMBL	A3FM74	0.0	A3FM74_POPTR; Abscisic acid responsive elements-binding protein 2
STRING	POPTR_0004s14790.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1962	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	2e-80	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Zhao Q, et al. Regulation and function of Arabidopsis AtGALK2 gene in abscisic acid response signaling. Mol. Biol. Rep., 2018. [PMID:24078097] Bao Y, et al. The tumor necrosis factor receptor-associated factor (TRAF)-like family protein SEVEN IN ABSENTIA 2 (SINA2) promotes drought tolerance in an ABA-dependent manner in Arabidopsis. New Phytol., 2014. 202(1): p. 174-87 [PMID:24350984] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Xie M, et al. AtWNK9 is regulated by ABA and dehydration and is involved in drought tolerance in Arabidopsis. Plant Physiol. Biochem., 2014. 77: p. 73-83 [PMID:24561249] Kim EY,Seo YS,Park KY,Kim SJ,Kim WT Overexpression of CaDSR6 increases tolerance to drought and salt stresses in transgenic Arabidopsis plants. Gene, 2014. 552(1): p. 146-54 [PMID:25234727] Zhang H, et al. The RING finger ubiquitin E3 ligase SDIR1 targets SDIR1-INTERACTING PROTEIN1 for degradation to modulate the salt stress response and ABA signaling in Arabidopsis. Plant Cell, 2015. 27(1): p. 214-27 [PMID:25616872] Baek D, et al. A Role for Arabidopsis miR399f in Salt, Drought, and ABA Signaling. Mol. Cells, 2016. 39(2): p. 111-8 [PMID:26674968] Bao Y, et al. Overexpression of the NDR1/HIN1-Like Gene NHL6 Modifies Seed Germination in Response to Abscisic Acid and Abiotic Stresses in Arabidopsis. PLoS ONE, 2016. 11(2): p. e0148572 [PMID:26849212] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Li X, et al. Dual Function of NAC072 in ABF3-Mediated ABA-Responsive Gene Regulation in Arabidopsis. Front Plant Sci, 2016. 7: p. 1075 [PMID:27486475] Wang Z, et al. Overexpressing Arabidopsis ABF3 increases tolerance to multiple abiotic stresses and reduces leaf size in alfalfa. Plant Physiol. Biochem., 2016. 109: p. 199-208 [PMID:27721135] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Kerr TCC, et al. Ectopic expression of two AREB/ABF orthologs increases drought tolerance in cotton (Gossypium hirsutum). Plant Cell Environ., 2018. 41(5): p. 898-907 [PMID:28098349] Lyzenga WJ,Sullivan V,Liu H,Stone SL The Kinase Activity of Calcineurin B-like Interacting Protein Kinase 26 (CIPK26) Influences Its Own Stability and that of the ABA-regulated Ubiquitin Ligase, Keep on Going (KEG). Front Plant Sci, 2017. 8: p. 502 [PMID:28443108] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Kim HJ, et al. Confirmation of Drought Tolerance of Ectopically Expressed AtABF3 Gene in Soybean. Mol. Cells, 2018. 41(5): p. 413-422 [PMID:29754472]