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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG019112.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 285aa MW: 31111.2 Da PI: 8.3701 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.7e-19 | 28 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d s +r r +lg+++++eeAa+a+++a+++l+g CCG019112.1 28 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDSPEEAARAYDEAARALRG 77 589******.7*********43...36*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.3E-35 | 28 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-14 | 28 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.95E-30 | 28 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.0E-27 | 28 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.244 | 28 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-6 | 29 | 40 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-19 | 29 | 85 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.0E-6 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MAEPETLKNP TTATTNKAQA TKGLTARRFV GVRQRPSGRW VAEIKDSSQR VRLWLGTYDS 60 PEEAARAYDE AARALRGGNA RTNFAAVNPS LNQSGSSLSN GGFNMPESDG RYSLSFSSLK 120 ARLSKNLQSI TARTTENKST KNRVSDHFTF ANIFHCRSYQ YQNPVDTKNI EKVVQPSIVV 180 PHASGHEPSY SWETSNVSDC SNGWIEFRQH GLDSDGSDTG EVITVDADQM MGWIDSPDAS 240 TCCGECSRSK RFKVSSSVVV PPTFSGSPSF CASPSFRGSA FHGEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-13 | 19 | 84 | 3 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182673 | 0.0 | AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence. | |||
GenBank | AC183426 | 0.0 | AC183426.2 Populus trichocarpa clone Pop1-45L17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011023436.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
TrEMBL | A0A2K2BJ74 | 1e-148 | A0A2K2BJ74_POPTR; Uncharacterized protein (Fragment) | ||||
STRING | POPTR_0014s07280.1 | 1e-157 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8324 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-16 | related to AP2 11 |