PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019112.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 285aa    MW: 31111.2 Da    PI: 8.3701
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019112.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-192877255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ GVr+++ +grWvAeI+d s   +r r +lg+++++eeAa+a+++a+++l+g
  CCG019112.1 28 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDSPEEAARAYDEAARALRG 77
                 589******.7*********43...36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.3E-352891IPR001471AP2/ERF domain
PfamPF008471.9E-142877IPR001471AP2/ERF domain
CDDcd000181.95E-302887No hitNo description
Gene3DG3DSA:3.30.730.103.0E-272885IPR001471AP2/ERF domain
PROSITE profilePS5103220.2442885IPR001471AP2/ERF domain
PRINTSPR003671.0E-62940IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-192985IPR016177DNA-binding domain
PRINTSPR003671.0E-65167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAEPETLKNP TTATTNKAQA TKGLTARRFV GVRQRPSGRW VAEIKDSSQR VRLWLGTYDS  60
PEEAARAYDE AARALRGGNA RTNFAAVNPS LNQSGSSLSN GGFNMPESDG RYSLSFSSLK  120
ARLSKNLQSI TARTTENKST KNRVSDHFTF ANIFHCRSYQ YQNPVDTKNI EKVVQPSIVV  180
PHASGHEPSY SWETSNVSDC SNGWIEFRQH GLDSDGSDTG EVITVDADQM MGWIDSPDAS  240
TCCGECSRSK RFKVSSSVVV PPTFSGSPSF CASPSFRGSA FHGEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-131984371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826730.0AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence.
GenBankAC1834260.0AC183426.2 Populus trichocarpa clone Pop1-45L17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023436.10.0PREDICTED: ethylene-responsive transcription factor ERF003-like
TrEMBLA0A2K2BJ741e-148A0A2K2BJ74_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0014s07280.11e-157(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-16related to AP2 11