PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019107.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 454aa    MW: 51260.2 Da    PI: 7.1346
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019107.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.61.7e-38151442128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                  p+GfrFhPt eel+++yL +k++g++++    ++ev ++k+ePwdLp k  +k++++ wyfF++r+ k+++ k +nr tk+g+Wk+t + k++++k +
  CCG019107.1  15 PVGFRFHPTHEELISNYLVPKTRGDNVKDLLLMAEVILCKHEPWDLPdKsIMKSDDQAWYFFCPRELKNSNRKFSNRRTKAGFWKSTCQGKPIKAKhT 112
                  89************************999888**************96447778999*************************************9967 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++++g++ktLvf+++  pk+++t W++ ey +
  CCG019107.1 113 KKVIGIRKTLVFHEKAGPKAKRTGWIIYEYDI 144
                  778***************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-4210162IPR003441NAC domain
PROSITE profilePS5100543.12814163IPR003441NAC domain
PfamPF023653.8E-2315143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MANPRSSVQL QLMKPVGFRF HPTHEELISN YLVPKTRGDN VKDLLLMAEV ILCKHEPWDL  60
PDKSIMKSDD QAWYFFCPRE LKNSNRKFSN RRTKAGFWKS TCQGKPIKAK HTKKVIGIRK  120
TLVFHEKAGP KAKRTGWIIY EYDITDSRLS KEGQYVLCRL KKNPDEKTKK GEQNHHMTTV  180
SDNDAEPSQS VASNSESQNG SAMTVNSAFD ASELSHHVAT NNFETRNSNG LMNYSDPQVS  240
ELNHYMASDF RNRNSNKVKS NSAYAGSGSL HSMSSNSKTL YWNQPTVGSD YKGGKSHYKA  300
FDPETQISNN MITMPINENW LMAYEKWLMA SDFKNQDSPS QPEGECGPSV VIPSVFINQS  360
TNDSESRSQM ASEFINQNAD KEIDIPAFGE RSSLTETPSD FLNQNPCKKT DMSTFEEGYS  420
SNSTTSISDN NLGDGALPEV IREKLEMLEK FLEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-2881679174Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826730.0AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023421.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLB9GPV30.0B9GPV3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s15530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2821533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.19e-42NAC 014