PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019106.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 622aa    MW: 69646.2 Da    PI: 4.5585
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019106.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.71.6e-34201482127
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkr.knratksgyWkatgkdkevlsk. 95 
                   +Gf+F+P+ eel+ +yL +k +g  +e    ++e++++++ePwdLp k  ++  ++ewyfF++rd ky++++r  nr+tk+gyWk+t k k++++  
  CCG019106.2  20 KAGFKFQPSPEELIINYLVPKSRGGIVEG-VPMAEINLCEHEPWDLPnKsIINLADQEWYFFCPRDLKYEKKSRlCNRKTKAGYWKSTCKIKPIMAGh 116
                  68***********************9888.56**************95345666999*************98883588*****************986 PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyr 127
                  +++++g+ ktL+fyk  +pk ++t W++ e+ 
  CCG019106.2 117 TKKNIGVMKTLAFYKTARPKDVRTGWMIYEFD 148
                  7778**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3712167IPR003441NAC domain
PROSITE profilePS5100539.90619169IPR003441NAC domain
PfamPF023651.6E-1821148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MNSDFSSVMA NPISLMQLMK AGFKFQPSPE ELIINYLVPK SRGGIVEGVP MAEINLCEHE  60
PWDLPNKSII NLADQEWYFF CPRDLKYEKK SRLCNRKTKA GYWKSTCKIK PIMAGHTKKN  120
IGVMKTLAFY KTARPKDVRT GWMIYEFDIV TNSSLSKKGQ YVLCRLENRS DERIKKGEQN  180
HLMASVSVSE AVPGQSMTSD FENQNSSEIV VSLASDDSEL SHHAGSDSGN QNSRELTPTR  240
QVSELSHYIA SDFKNQNSCQ SGSNLAYDGT GSCHSTAFNS ETQYRNQPTV GSVCIVNKNH  300
YMAFDLENQN PNELLTVDSV YTVSKNHYMA PNELPTVDSA YTVSKNRYNP NEPLTADSVY  360
TVSKNHYMAP NELPTVDSAY TVSNNHYMAF DSYQNPNELL TADSAYIVDK NHYMAFDSEY  420
QKPNELLTAD SVYVSESQYM PFDLENQNLN NINSISTYEN SLMASHGFEN KNPPFPPEGE  480
CGTSVVMPFK FINQSTYNES ELSSLLASDF GNQNLDKEIN LSAFDEGEWS SLTAIPSDFG  540
NQNPSKKADI STHEEGFSSY LMVPFSENNL ADVSLPDVSP ELLPEALEAI FEPQKSPNTV  600
LQPPECVEAS HSYMDYDTST ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-261917215171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826730.0AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023416.10.0PREDICTED: uncharacterized protein LOC105124916 isoform X1
TrEMBLA0A2K2BJ930.0A0A2K2BJ93_POPTR; Uncharacterized protein
STRINGPOPTR_0002s15550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2821433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.13e-35NAC 014