PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019068.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 649aa    MW: 72727.2 Da    PI: 4.9977
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019068.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.1e-054614971455
                  HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +r+N++f  Lr+++P+ +         K +iL  +++Y+k+L+
  CCG019068.1 461 QRVNDKFIVLRSMVPSiS------EIGKESILSDTINYLKQLE 497
                  689*************76......677888***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.2E-5015190IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.902447496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0026456502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.60E-4461501No hitNo description
SuperFamilySSF474591.27E-8461514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-7461507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MAHAVQSQQV VLEKLRKQLA IAVRSVQWSY AIFWSLSTRQ NGVLEWGGGY YNGDIKTRKV  60
QATELKADKI GLQRSEQLRE LYKSLLEGDA GQQAKKSSPA LSPEDLSDEE WYYLVCMSFV  120
FNPGEGLPGR ALANKQTIWL CNAQYADSKV FSRSLLAKTV VCFPYLEGVM ELGVTELVTE  180
DPSLVQHIKA SLLDFSKPVC SEKSSSAAHN GDDDEDPMST KINHEIVDSL SLENLCTPTD  240
DIELEQEGIN DLHGSVHEEF KRNSPDDCSD GCEYNHQTEE SFMLEGLNGG VSQVQSWHFM  300
DDEFSDDVLD SMNSSECISE AVVKQGKAVL SSKGKNVTLL QSQVFQEGNH TKLSSFDLGA  360
DDDLHYRRTV CVILKSSSQS IENPCFRSGD HKSSFFSWKK RAVDGLMPRV QQNMLKKILF  420
AVPLIYGSRS LRFDKENGGT DCLKKLEGCE TCKEHYKSDK QRVNDKFIVL RSMVPSISEI  480
GKESILSDTI NYLKQLESRV AELESCKGWI DHEAGHRSYM DMVDQTSDND DIKKIDNGKR  540
SWVNKRKALD IDEAELELDG VSPKDGIPLD LKVCTKEKEV LIEIRCPYRE YMLLDIMGEI  600
NKLQLDVHSV QSSTLDGIFA LTLKSKFRGA AAAPAGMIEQ AIWKIAGKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-151618851227Transcription factor MYC3
4ywc_A1e-151618851227Transcription factor MYC3
4ywc_B1e-151618851227Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023340.10.0PREDICTED: transcription factor EGL1-like isoform X2
TrEMBLB9GQ940.0B9GQ94_POPTR; BHLH family protein
STRINGPOPTR_0002s16080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-156bHLH family protein