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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG018998.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 305aa MW: 34777.8 Da PI: 5.7143 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.6e-19 | 106 | 155 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +grW+AeIrdp+ r r +lg+++taeeAa +++a+ +++g CCG018998.1 106 RYRGVRQRP-WGRWAAEIRDPY----RrIRLWLGTYDTAEEAAMVYDQAAIRIKG 155 8********.**********75....34***********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.45E-31 | 105 | 162 | No hit | No description |
PROSITE profile | PS51032 | 23.604 | 106 | 163 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-37 | 106 | 169 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 106 | 163 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 106 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-21 | 106 | 163 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.6E-10 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MNRFSTKYTE HKTVTNKLVK WEDSKATRIV RISVTDGNAT DSSGDEKEES KRHHPRVKKH 60 INEIRITSCG SDRAAEDAKK ISKVVSRQQV VKKISRDQCS YPGGKRYRGV RQRPWGRWAA 120 EIRDPYRRIR LWLGTYDTAE EAAMVYDQAA IRIKGPDAQT NFTKPPVSKQ HAPDVDINVN 180 ISGYESGKES HNSLCSPTSV LRFQSTEELG PQSQAAVQSD CCWRIQTQEE VVQEEIIKVG 240 EDDECLVTDP FCLKEFWDFE NPAPIFLEEC SVPDTVLRED YADISVHLDG DLGSCLWDVD 300 KYFEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 104 | 162 | 3 | 62 | ATERF1 |
3gcc_A | 2e-20 | 104 | 162 | 3 | 62 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208094 | 0.0 | AC208094.1 Populus trichocarpa clone JGIACSB09-L10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011023223.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF5-like | ||||
TrEMBL | A0A3N7G3J3 | 0.0 | A0A3N7G3J3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s16900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46310.1 | 7e-48 | cytokinin response factor 5 |