PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018959.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 618aa    MW: 68266.5 Da    PI: 6.7916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018959.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.1e-13449495455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  CCG018959.1 449 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYINELQ 495
                  799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-5352240IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.326445494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-15448499No hitNo description
SuperFamilySSF474591.44E-18448509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10449495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-19449509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-17451500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MKIEVGMGGG AWNDEDKTMV AAVLGSKAFN YLLSNPVANQ NLLMVMCGDE NLQNKLSDLV  60
DCPNSSNFSW NYAIFWQISC SKSGDWVLGW GDGSCREPKE GEESEFTRIL NIRLEDETQQ  120
RMRKRVIQKL QTLFGESDED NYALGLDRVT DTEMFFLASM YFSFPRGKGG PGNCYASGKH  180
VWISDALKSG PDYCVRSFLA KSAGFQTIVL VATDVGVVEL GSVRSVPESI EMVQSIRSWF  240
STRSSSIRTK PIDAAVAAAA MPVVSEKKDE NSSFSNFGIV ERVEGAPKIF GQDLNSSNHG  300
HGFREKLAIR KMEERPSWNA YQNGSRPAFP GTRNRLHGSN WAQSFGLKQG TPVEVYGSQA  360
TANNLKELVN GVREEFRHNH YQGQKQVQVQ IDFSGATSGP SVIGRPLSAE SEHSDVEASC  420
KEERPGAADD RRPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNISKMDK  480
ASLLGDAISY INELQAKLKK MEAERGKLEG IVRDSSTLDV NTNGESHNRS GDVDIQASHD  540
EVMVRVSCPL DSHPASRVIQ ALKEAQVTVI ESKLSTANDT VFHTFVIKSE GSEQLTKEKL  600
MAAISCESSS LQSLSSTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-30443505264Transcription factor MYC2
5gnj_B4e-30443505264Transcription factor MYC2
5gnj_E4e-30443505264Transcription factor MYC2
5gnj_F4e-30443505264Transcription factor MYC2
5gnj_G4e-30443505264Transcription factor MYC2
5gnj_I4e-30443505264Transcription factor MYC2
5gnj_M4e-30443505264Transcription factor MYC2
5gnj_N4e-30443505264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1430438RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023168.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A3N7EJC80.0A0A3N7EJC8_POPTR; Uncharacterized protein
STRINGPOPTR_0014s09520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]